BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bkv-miR-b1-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bkv-miR-B1-3p MIMAT0009150 BK polyomavirus miR-B1-3p 16 6.9
jcv-miR-J1-3p MIMAT0009148 JC polyomavirus miR-J1-3p 16 6.9
gsa-miR-36-5p MIMAT0035258 Gyrodactylus salaris miR-36-5p 14 27
eca-miR-9184 MIMAT0034765 Equus caballus miR-9184 14 27
bdi-miR7738-3p MIMAT0030213 Brachypodium distachyon miR7738-3p 14 27
ola-miR-137 MIMAT0022577 Oryzias latipes miR-137 14 27
osa-miR5071 MIMAT0020551 Oryza sativa miR5071 14 27
sko-miR-4835-3p MIMAT0020052 Saccoglossus kowalevskii miR-4835-3p 14 27
tca-miR-3802-5p MIMAT0018620 Tribolium castaneum miR-3802-5p 14 27
hsa-miR-1273e MIMAT0018079 Homo sapiens miR-1273e 14 27
aly-miR825-5p MIMAT0017605 Arabidopsis lyrata miR825-5p 14 27
>bkv-miR-B1-3p MIMAT0009150 BK polyomavirus miR-B1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcttgat 8
||||||||
Sbjct: 1 tgcttgat 8
>jcv-miR-J1-3p MIMAT0009148 JC polyomavirus miR-J1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcttgat 8
||||||||
Sbjct: 1 tgcttgat 8
>gsa-miR-36-5p MIMAT0035258 Gyrodactylus salaris miR-36-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgat 8
|||||||
Sbjct: 2 gcttgat 8
>eca-miR-9184 MIMAT0034765 Equus caballus miR-9184
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgat 8
|||||||
Sbjct: 2 gcttgat 8
>bdi-miR7738-3p MIMAT0030213 Brachypodium distachyon miR7738-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcttga 7
|||||||
Sbjct: 2 tgcttga 8
>ola-miR-137 MIMAT0022577 Oryzias latipes miR-137
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcttga 7
|||||||
Sbjct: 2 tgcttga 8
>osa-miR5071 MIMAT0020551 Oryza sativa miR5071
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcttga 7
|||||||
Sbjct: 7 tgcttga 1
>sko-miR-4835-3p MIMAT0020052 Saccoglossus kowalevskii
miR-4835-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcttga 7
|||||||
Sbjct: 7 tgcttga 1
>tca-miR-3802-5p MIMAT0018620 Tribolium castaneum miR-3802-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcttga 7
|||||||
Sbjct: 2 tgcttga 8
>hsa-miR-1273e MIMAT0018079 Homo sapiens miR-1273e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcttga 7
|||||||
Sbjct: 2 tgcttga 8
>aly-miR825-5p MIMAT0017605 Arabidopsis lyrata miR825-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcttga 7
|||||||
Sbjct: 7 tgcttga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 89
Number of successful extensions: 81
Number of sequences better than 100.0: 11
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)