BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bkv-miR-b1-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bkv-miR-B1-3p MIMAT0009150 BK polyomavirus miR-B1-3p                   16   6.9  
jcv-miR-J1-3p MIMAT0009148 JC polyomavirus miR-J1-3p                   16   6.9  
gsa-miR-36-5p MIMAT0035258 Gyrodactylus salaris miR-36-5p              14      27
eca-miR-9184 MIMAT0034765 Equus caballus miR-9184                      14      27
bdi-miR7738-3p MIMAT0030213 Brachypodium distachyon miR7738-3p         14      27
ola-miR-137 MIMAT0022577 Oryzias latipes miR-137                       14      27
osa-miR5071 MIMAT0020551 Oryza sativa miR5071                          14      27
sko-miR-4835-3p MIMAT0020052 Saccoglossus kowalevskii miR-4835-3p      14      27
tca-miR-3802-5p MIMAT0018620 Tribolium castaneum miR-3802-5p           14      27
hsa-miR-1273e MIMAT0018079 Homo sapiens miR-1273e                      14      27
aly-miR825-5p MIMAT0017605 Arabidopsis lyrata miR825-5p                14      27
>bkv-miR-B1-3p MIMAT0009150 BK polyomavirus miR-B1-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tgcttgat 8
         ||||||||
Sbjct: 1 tgcttgat 8
>jcv-miR-J1-3p MIMAT0009148 JC polyomavirus miR-J1-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tgcttgat 8
         ||||||||
Sbjct: 1 tgcttgat 8
>gsa-miR-36-5p MIMAT0035258 Gyrodactylus salaris miR-36-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gcttgat 8
         |||||||
Sbjct: 2 gcttgat 8
>eca-miR-9184 MIMAT0034765 Equus caballus miR-9184
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gcttgat 8
         |||||||
Sbjct: 2 gcttgat 8
>bdi-miR7738-3p MIMAT0030213 Brachypodium distachyon miR7738-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgcttga 7
         |||||||
Sbjct: 2 tgcttga 8
>ola-miR-137 MIMAT0022577 Oryzias latipes miR-137
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgcttga 7
         |||||||
Sbjct: 2 tgcttga 8
>osa-miR5071 MIMAT0020551 Oryza sativa miR5071
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgcttga 7
         |||||||
Sbjct: 7 tgcttga 1
>sko-miR-4835-3p MIMAT0020052 Saccoglossus kowalevskii
         miR-4835-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgcttga 7
         |||||||
Sbjct: 7 tgcttga 1
>tca-miR-3802-5p MIMAT0018620 Tribolium castaneum miR-3802-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgcttga 7
         |||||||
Sbjct: 2 tgcttga 8
>hsa-miR-1273e MIMAT0018079 Homo sapiens miR-1273e
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgcttga 7
         |||||||
Sbjct: 2 tgcttga 8
>aly-miR825-5p MIMAT0017605 Arabidopsis lyrata miR825-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgcttga 7
         |||||||
Sbjct: 7 tgcttga 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 89
Number of successful extensions: 81
Number of sequences better than 100.0: 11
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)