BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bra-miR408-3p MIMAT0035684 Brassica rapa miR408-3p 16 6.9
gga-miR-1632-5p MIMAT0007504 Gallus gallus miR-1632-5p 16 6.9
mdv1-miR-M1-5p MIMAT0003920 Mareks disease miR-M1-5p 16 6.9
oha-miR-1788-5p MIMAT0036753 Ophiophagus hannah miR-1788-5p 14 27
ssa-miR-1788-5p MIMAT0032412 Salmo salar miR-1788-5p 14 27
hhi-miR-1788 MIMAT0030352 Hippoglossus hippoglossus miR-1788 14 27
ipu-miR-1788 MIMAT0029433 Ictalurus punctatus miR-1788 14 27
tgu-miR-1788 MIMAT0025407 Taeniopygia guttata miR-1788 14 27
aca-miR-1788-5p MIMAT0021805 Anolis carolinensis miR-1788-5p 14 27
pma-miR-1788a-5p MIMAT0019561 Petromyzon marinus miR-1788a-5p 14 27
rno-miR-3580-5p MIMAT0017868 Rattus norvegicus miR-3580-5p 14 27
dre-miR-1788-5p MIMAT0011294 Danio rerio miR-1788-5p 14 27
nve-miR-2027-5p MIMAT0009772 Nematostella vectensis miR-2027-5p 14 27
gga-miR-1788-5p MIMAT0007700 Gallus gallus miR-1788-5p 14 27
>bra-miR408-3p MIMAT0035684 Brassica rapa miR408-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcttgtt 8
||||||||
Sbjct: 1 tgcttgtt 8
>gga-miR-1632-5p MIMAT0007504 Gallus gallus miR-1632-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcttgtt 8
||||||||
Sbjct: 1 tgcttgtt 8
>mdv1-miR-M1-5p MIMAT0003920 Mareks disease miR-M1-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcttgtt 8
||||||||
Sbjct: 1 tgcttgtt 8
>oha-miR-1788-5p MIMAT0036753 Ophiophagus hannah miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
>ssa-miR-1788-5p MIMAT0032412 Salmo salar miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
>hhi-miR-1788 MIMAT0030352 Hippoglossus hippoglossus miR-1788
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
>ipu-miR-1788 MIMAT0029433 Ictalurus punctatus miR-1788
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
>tgu-miR-1788 MIMAT0025407 Taeniopygia guttata miR-1788
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
>aca-miR-1788-5p MIMAT0021805 Anolis carolinensis miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
>pma-miR-1788a-5p MIMAT0019561 Petromyzon marinus miR-1788a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
>rno-miR-3580-5p MIMAT0017868 Rattus norvegicus miR-3580-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcttgt 7
|||||||
Sbjct: 1 tgcttgt 7
>dre-miR-1788-5p MIMAT0011294 Danio rerio miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
>nve-miR-2027-5p MIMAT0009772 Nematostella vectensis miR-2027-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 1 gcttgtt 7
>gga-miR-1788-5p MIMAT0007700 Gallus gallus miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttgtt 8
|||||||
Sbjct: 2 gcttgtt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 135
Number of extensions: 118
Number of successful extensions: 83
Number of sequences better than 100.0: 14
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
