BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-28-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-28-5p MIMAT0019193 Rhesus lymphocryptovirus miR-rL1... 16 6.9
bta-miR-2387 MIMAT0011939 Bos taurus miR-2387 16 6.9
ata-miR528-5p MIMAT0037192 Aegilops tauschii miR528-5p 14 27
ssc-miR-9816-3p MIMAT0037034 Sus scrofa miR-9816-3p 14 27
ppe-miR8130-3p MIMAT0031557 Prunus persica miR8130-3p 14 27
mmu-miR-7686-5p MIMAT0029898 Mus musculus miR-7686-5p 14 27
mml-miR-7166-3p MIMAT0028267 Macaca mulatta miR-7166-3p 14 27
mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p 14 27
mmu-miR-6983-5p MIMAT0027868 Mus musculus miR-6983-5p 14 27
mmu-miR-6909-3p MIMAT0027719 Mus musculus miR-6909-3p 14 27
mml-miR-4650 MIMAT0024344 Macaca mulatta miR-4650 14 27
sly-miR6022 MIMAT0023590 Solanum lycopersicum miR6022 14 27
stu-miR6022 MIMAT0023589 Solanum tuberosum miR6022 14 27
hsa-miR-5581-5p MIMAT0022275 Homo sapiens miR-5581-5p 14 27
rmi-miR-5320 MIMAT0021393 Rhipicephalus microplus miR-5320 14 27
ssp-miR528 MIMAT0020288 Saccharum sp. miR528 14 27
bdi-miR528-5p MIMAT0020662 Brachypodium distachyon miR528-5p 14 27
hsa-miR-4533 MIMAT0019072 Homo sapiens miR-4533 14 27
tca-miR-3877-5p MIMAT0018846 Tribolium castaneum miR-3877-5p 14 27
hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297 14 27
hsa-miR-3202 MIMAT0015089 Homo sapiens miR-3202 14 27
tgu-miR-2996 MIMAT0014600 Taeniopygia guttata miR-2996 14 27
sbi-miR528 MIMAT0014048 Sorghum bicolor miR528 14 27
zma-miR528b-5p MIMAT0014029 Zea mays miR528b-5p 14 27
zma-miR528a-5p MIMAT0014028 Zea mays miR528a-5p 14 27
iltv-miR-I2 MIMAT0012725 Infectious laryngotracheitis miR-I2 14 27
osa-miR528-5p MIMAT0002884 Oryza sativa miR528-5p 14 27
>rlcv-miR-rL1-28-5p MIMAT0019193 Rhesus lymphocryptovirus
miR-rL1-28-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggaaggc 8
||||||||
Sbjct: 1 tggaaggc 8
>bta-miR-2387 MIMAT0011939 Bos taurus miR-2387
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggaaggc 8
||||||||
Sbjct: 1 tggaaggc 8
>ata-miR528-5p MIMAT0037192 Aegilops tauschii miR528-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>ssc-miR-9816-3p MIMAT0037034 Sus scrofa miR-9816-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 2 tggaagg 8
>ppe-miR8130-3p MIMAT0031557 Prunus persica miR8130-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggaagg 7
|||||||
Sbjct: 8 tggaagg 2
>mmu-miR-7686-5p MIMAT0029898 Mus musculus miR-7686-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggaagg 7
|||||||
Sbjct: 7 tggaagg 1
>mml-miR-7166-3p MIMAT0028267 Macaca mulatta miR-7166-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 2 tggaagg 8
>mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggaagg 7
|||||||
Sbjct: 7 tggaagg 1
>mmu-miR-6983-5p MIMAT0027868 Mus musculus miR-6983-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 2 tggaagg 8
>mmu-miR-6909-3p MIMAT0027719 Mus musculus miR-6909-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggaaggc 8
|||||||
Sbjct: 8 ggaaggc 2
>mml-miR-4650 MIMAT0024344 Macaca mulatta miR-4650
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>sly-miR6022 MIMAT0023590 Solanum lycopersicum miR6022
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>stu-miR6022 MIMAT0023589 Solanum tuberosum miR6022
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>hsa-miR-5581-5p MIMAT0022275 Homo sapiens miR-5581-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggaaggc 8
|||||||
Sbjct: 8 ggaaggc 2
>rmi-miR-5320 MIMAT0021393 Rhipicephalus microplus miR-5320
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>ssp-miR528 MIMAT0020288 Saccharum sp. miR528
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>bdi-miR528-5p MIMAT0020662 Brachypodium distachyon miR528-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>hsa-miR-4533 MIMAT0019072 Homo sapiens miR-4533
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>tca-miR-3877-5p MIMAT0018846 Tribolium castaneum miR-3877-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggaagg 7
|||||||
Sbjct: 8 tggaagg 2
>hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggaaggc 8
|||||||
Sbjct: 8 ggaaggc 2
>hsa-miR-3202 MIMAT0015089 Homo sapiens miR-3202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>tgu-miR-2996 MIMAT0014600 Taeniopygia guttata miR-2996
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggaagg 7
|||||||
Sbjct: 7 tggaagg 1
>sbi-miR528 MIMAT0014048 Sorghum bicolor miR528
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>zma-miR528b-5p MIMAT0014029 Zea mays miR528b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>zma-miR528a-5p MIMAT0014028 Zea mays miR528a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
>iltv-miR-I2 MIMAT0012725 Infectious laryngotracheitis miR-I2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggaaggc 8
|||||||
Sbjct: 1 ggaaggc 7
>osa-miR528-5p MIMAT0002884 Oryza sativa miR528-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggaagg 7
|||||||
Sbjct: 1 tggaagg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 262
Number of extensions: 233
Number of successful extensions: 205
Number of sequences better than 100.0: 27
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 27
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
