VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wssv-miR185
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8302-5p MIMAT0033125 Pristionchus pacificus miR-8302-5p        14      27
hsa-miR-6501-5p MIMAT0025458 Homo sapiens miR-6501-5p                  14      27
nta-miR6144 MIMAT0024729 Nicotiana tabacum miR6144                     14      27
bmo-miR-2845 MIMAT0013766 Bombyx mori miR-2845                         14      27

>ppc-miR-8302-5p MIMAT0033125 Pristionchus pacificus miR-8302-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ggcaacg 8
         |||||||
Sbjct: 8 ggcaacg 2



>hsa-miR-6501-5p MIMAT0025458 Homo sapiens miR-6501-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tggcaac 7
         |||||||
Sbjct: 8 tggcaac 2



>nta-miR6144 MIMAT0024729 Nicotiana tabacum miR6144
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggcaac 7
         |||||||
Sbjct: 1 tggcaac 7



>bmo-miR-2845 MIMAT0013766 Bombyx mori miR-2845
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ggcaacg 8
         |||||||
Sbjct: 8 ggcaacg 2



  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 184
Number of extensions: 180
Number of successful extensions: 161
Number of sequences better than 100.0: 4
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 4
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)