BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b9
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hsa-miR-4745-3p MIMAT0019879 Homo sapiens miR-4745-3p                  14      20
bhv1-miR-B9 MIMAT0013972 Bovine herpesvirus miR-B9                     14      20
dps-miR-2568b-3p MIMAT0012409 Drosophila pseudoobscura miR-2568b-3p    14      20
mtr-miR166d MIMAT0011068 Medicago truncatula miR166d                   14      20
bdi-miR7723a-3p MIMAT0030173 Brachypodium distachyon miR7723a-3p       12      80
mdo-miR-7250-3p MIMAT0028467 Monodelphis domestica miR-7250-3p         12      80
mml-miR-7184-5p MIMAT0028320 Macaca mulatta miR-7184-5p                12      80
hsa-miR-7155-3p MIMAT0028221 Homo sapiens miR-7155-3p                  12      80
mmu-miR-6982-3p MIMAT0027867 Mus musculus miR-6982-3p                  12      80
hsa-miR-6895-5p MIMAT0027690 Homo sapiens miR-6895-5p                  12      80
hsa-miR-6851-3p MIMAT0027603 Homo sapiens miR-6851-3p                  12      80
hsa-miR-6845-5p MIMAT0027590 Homo sapiens miR-6845-5p                  12      80
hsa-miR-6781-5p MIMAT0027462 Homo sapiens miR-6781-5p                  12      80
hsa-miR-6762-5p MIMAT0027424 Homo sapiens miR-6762-5p                  12      80
hsa-miR-6749-5p MIMAT0027398 Homo sapiens miR-6749-5p                  12      80
gga-miR-6566-5p MIMAT0025637 Gallus gallus miR-6566-5p                 12      80
aca-miR-5452-5p MIMAT0022075 Anolis carolinensis miR-5452-5p           12      80
hsa-miR-4747-3p MIMAT0019883 Homo sapiens miR-4747-3p                  12      80
pma-miR-4631 MIMAT0019665 Petromyzon marinus miR-4631                  12      80
pma-miR-4607 MIMAT0019641 Petromyzon marinus miR-4607                  12      80
ame-miR-3779 MIMAT0018556 Apis mellifera miR-3779                      12      80
ppy-miR-1291 MIMAT0016213 Pongo pygmaeus miR-1291                      12      80
ppy-miR-663b MIMAT0016093 Pongo pygmaeus miR-663b                      12      80
ppy-miR-575 MIMAT0016016 Pongo pygmaeus miR-575                        12      80
hsa-miR-3181 MIMAT0015061 Homo sapiens miR-3181                        12      80
hsa-miR-3136-3p MIMAT0019203 Homo sapiens miR-3136-3p                  12      80
mmu-miR-3109-3p MIMAT0014950 Mus musculus miR-3109-3p                  12      80
mmu-miR-3091-3p MIMAT0014904 Mus musculus miR-3091-3p                  12      80
eca-miR-1291a MIMAT0012968 Equus caballus miR-1291a                    12      80
bta-miR-2284s MIMAT0011811 Bos taurus miR-2284s                        12      80
bta-miR-1291 MIMAT0009956 Bos taurus miR-1291                          12      80
ptr-miR-663b MIMAT0008310 Pan troglodytes miR-663b                     12      80
ptr-miR-1291 MIMAT0008009 Pan troglodytes miR-1291                     12      80
osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2                      12      80
hsa-miR-1291 MIMAT0005881 Homo sapiens miR-1291                        12      80
hsa-miR-663b MIMAT0005867 Homo sapiens miR-663b                        12      80
ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p           12      80
>hsa-miR-4745-3p MIMAT0019879 Homo sapiens miR-4745-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggcccg 7
         |||||||
Sbjct: 1 tggcccg 7
>bhv1-miR-B9 MIMAT0013972 Bovine herpesvirus miR-B9
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggcccg 7
         |||||||
Sbjct: 2 tggcccg 8
>dps-miR-2568b-3p MIMAT0012409 Drosophila pseudoobscura
         miR-2568b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggcccg 7
         |||||||
Sbjct: 2 tggcccg 8
>mtr-miR166d MIMAT0011068 Medicago truncatula miR166d
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tggcccg 7
         |||||||
Sbjct: 8 tggcccg 2
>bdi-miR7723a-3p MIMAT0030173 Brachypodium distachyon
         miR7723a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 8 tggccc 3
>mdo-miR-7250-3p MIMAT0028467 Monodelphis domestica miR-7250-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>mml-miR-7184-5p MIMAT0028320 Macaca mulatta miR-7184-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 8 tggccc 3
>hsa-miR-7155-3p MIMAT0028221 Homo sapiens miR-7155-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>mmu-miR-6982-3p MIMAT0027867 Mus musculus miR-6982-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>hsa-miR-6895-5p MIMAT0027690 Homo sapiens miR-6895-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 8 tggccc 3
>hsa-miR-6851-3p MIMAT0027603 Homo sapiens miR-6851-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>hsa-miR-6845-5p MIMAT0027590 Homo sapiens miR-6845-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 8 tggccc 3
>hsa-miR-6781-5p MIMAT0027462 Homo sapiens miR-6781-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggcccg 7
         ||||||
Sbjct: 6 ggcccg 1
>hsa-miR-6762-5p MIMAT0027424 Homo sapiens miR-6762-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 8 tggccc 3
>hsa-miR-6749-5p MIMAT0027398 Homo sapiens miR-6749-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggcccg 7
         ||||||
Sbjct: 7 ggcccg 2
>gga-miR-6566-5p MIMAT0025637 Gallus gallus miR-6566-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggcccg 7
         ||||||
Sbjct: 3 ggcccg 8
>aca-miR-5452-5p MIMAT0022075 Anolis carolinensis miR-5452-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>hsa-miR-4747-3p MIMAT0019883 Homo sapiens miR-4747-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggcccg 7
         ||||||
Sbjct: 3 ggcccg 8
>pma-miR-4631 MIMAT0019665 Petromyzon marinus miR-4631
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggcccg 7
         ||||||
Sbjct: 8 ggcccg 3
>pma-miR-4607 MIMAT0019641 Petromyzon marinus miR-4607
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 6 tggccc 1
>ame-miR-3779 MIMAT0018556 Apis mellifera miR-3779
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggcccg 7
         ||||||
Sbjct: 8 ggcccg 3
>ppy-miR-1291 MIMAT0016213 Pongo pygmaeus miR-1291
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>ppy-miR-663b MIMAT0016093 Pongo pygmaeus miR-663b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 3 tggccc 8
>ppy-miR-575 MIMAT0016016 Pongo pygmaeus miR-575
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 6 tggccc 1
>hsa-miR-3181 MIMAT0015061 Homo sapiens miR-3181
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggcccg 7
         ||||||
Sbjct: 8 ggcccg 3
>hsa-miR-3136-3p MIMAT0019203 Homo sapiens miR-3136-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>mmu-miR-3109-3p MIMAT0014950 Mus musculus miR-3109-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 8 tggccc 3
>mmu-miR-3091-3p MIMAT0014904 Mus musculus miR-3091-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggcccg 7
         ||||||
Sbjct: 6 ggcccg 1
>eca-miR-1291a MIMAT0012968 Equus caballus miR-1291a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>bta-miR-2284s MIMAT0011811 Bos taurus miR-2284s
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>bta-miR-1291 MIMAT0009956 Bos taurus miR-1291
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>ptr-miR-663b MIMAT0008310 Pan troglodytes miR-663b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 3 tggccc 8
>ptr-miR-1291 MIMAT0008009 Pan troglodytes miR-1291
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>hsa-miR-1291 MIMAT0005881 Homo sapiens miR-1291
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
>hsa-miR-663b MIMAT0005867 Homo sapiens miR-663b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 3 tggccc 8
>ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggccc 6
         ||||||
Sbjct: 1 tggccc 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 72
Number of extensions: 68
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)