BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv1-miR-b9
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-4745-3p MIMAT0019879 Homo sapiens miR-4745-3p 14 20
bhv1-miR-B9 MIMAT0013972 Bovine herpesvirus miR-B9 14 20
dps-miR-2568b-3p MIMAT0012409 Drosophila pseudoobscura miR-2568b-3p 14 20
mtr-miR166d MIMAT0011068 Medicago truncatula miR166d 14 20
bdi-miR7723a-3p MIMAT0030173 Brachypodium distachyon miR7723a-3p 12 80
mdo-miR-7250-3p MIMAT0028467 Monodelphis domestica miR-7250-3p 12 80
mml-miR-7184-5p MIMAT0028320 Macaca mulatta miR-7184-5p 12 80
hsa-miR-7155-3p MIMAT0028221 Homo sapiens miR-7155-3p 12 80
mmu-miR-6982-3p MIMAT0027867 Mus musculus miR-6982-3p 12 80
hsa-miR-6895-5p MIMAT0027690 Homo sapiens miR-6895-5p 12 80
hsa-miR-6851-3p MIMAT0027603 Homo sapiens miR-6851-3p 12 80
hsa-miR-6845-5p MIMAT0027590 Homo sapiens miR-6845-5p 12 80
hsa-miR-6781-5p MIMAT0027462 Homo sapiens miR-6781-5p 12 80
hsa-miR-6762-5p MIMAT0027424 Homo sapiens miR-6762-5p 12 80
hsa-miR-6749-5p MIMAT0027398 Homo sapiens miR-6749-5p 12 80
gga-miR-6566-5p MIMAT0025637 Gallus gallus miR-6566-5p 12 80
aca-miR-5452-5p MIMAT0022075 Anolis carolinensis miR-5452-5p 12 80
hsa-miR-4747-3p MIMAT0019883 Homo sapiens miR-4747-3p 12 80
pma-miR-4631 MIMAT0019665 Petromyzon marinus miR-4631 12 80
pma-miR-4607 MIMAT0019641 Petromyzon marinus miR-4607 12 80
ame-miR-3779 MIMAT0018556 Apis mellifera miR-3779 12 80
ppy-miR-1291 MIMAT0016213 Pongo pygmaeus miR-1291 12 80
ppy-miR-663b MIMAT0016093 Pongo pygmaeus miR-663b 12 80
ppy-miR-575 MIMAT0016016 Pongo pygmaeus miR-575 12 80
hsa-miR-3181 MIMAT0015061 Homo sapiens miR-3181 12 80
hsa-miR-3136-3p MIMAT0019203 Homo sapiens miR-3136-3p 12 80
mmu-miR-3109-3p MIMAT0014950 Mus musculus miR-3109-3p 12 80
mmu-miR-3091-3p MIMAT0014904 Mus musculus miR-3091-3p 12 80
eca-miR-1291a MIMAT0012968 Equus caballus miR-1291a 12 80
bta-miR-2284s MIMAT0011811 Bos taurus miR-2284s 12 80
bta-miR-1291 MIMAT0009956 Bos taurus miR-1291 12 80
ptr-miR-663b MIMAT0008310 Pan troglodytes miR-663b 12 80
ptr-miR-1291 MIMAT0008009 Pan troglodytes miR-1291 12 80
osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2 12 80
hsa-miR-1291 MIMAT0005881 Homo sapiens miR-1291 12 80
hsa-miR-663b MIMAT0005867 Homo sapiens miR-663b 12 80
ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p 12 80
>hsa-miR-4745-3p MIMAT0019879 Homo sapiens miR-4745-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggcccg 7
|||||||
Sbjct: 1 tggcccg 7
>bhv1-miR-B9 MIMAT0013972 Bovine herpesvirus miR-B9
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggcccg 7
|||||||
Sbjct: 2 tggcccg 8
>dps-miR-2568b-3p MIMAT0012409 Drosophila pseudoobscura
miR-2568b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggcccg 7
|||||||
Sbjct: 2 tggcccg 8
>mtr-miR166d MIMAT0011068 Medicago truncatula miR166d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggcccg 7
|||||||
Sbjct: 8 tggcccg 2
>bdi-miR7723a-3p MIMAT0030173 Brachypodium distachyon
miR7723a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggccc 6
||||||
Sbjct: 8 tggccc 3
>mdo-miR-7250-3p MIMAT0028467 Monodelphis domestica miR-7250-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>mml-miR-7184-5p MIMAT0028320 Macaca mulatta miR-7184-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggccc 6
||||||
Sbjct: 8 tggccc 3
>hsa-miR-7155-3p MIMAT0028221 Homo sapiens miR-7155-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>mmu-miR-6982-3p MIMAT0027867 Mus musculus miR-6982-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>hsa-miR-6895-5p MIMAT0027690 Homo sapiens miR-6895-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggccc 6
||||||
Sbjct: 8 tggccc 3
>hsa-miR-6851-3p MIMAT0027603 Homo sapiens miR-6851-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>hsa-miR-6845-5p MIMAT0027590 Homo sapiens miR-6845-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggccc 6
||||||
Sbjct: 8 tggccc 3
>hsa-miR-6781-5p MIMAT0027462 Homo sapiens miR-6781-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcccg 7
||||||
Sbjct: 6 ggcccg 1
>hsa-miR-6762-5p MIMAT0027424 Homo sapiens miR-6762-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggccc 6
||||||
Sbjct: 8 tggccc 3
>hsa-miR-6749-5p MIMAT0027398 Homo sapiens miR-6749-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcccg 7
||||||
Sbjct: 7 ggcccg 2
>gga-miR-6566-5p MIMAT0025637 Gallus gallus miR-6566-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcccg 7
||||||
Sbjct: 3 ggcccg 8
>aca-miR-5452-5p MIMAT0022075 Anolis carolinensis miR-5452-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>hsa-miR-4747-3p MIMAT0019883 Homo sapiens miR-4747-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcccg 7
||||||
Sbjct: 3 ggcccg 8
>pma-miR-4631 MIMAT0019665 Petromyzon marinus miR-4631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcccg 7
||||||
Sbjct: 8 ggcccg 3
>pma-miR-4607 MIMAT0019641 Petromyzon marinus miR-4607
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggccc 6
||||||
Sbjct: 6 tggccc 1
>ame-miR-3779 MIMAT0018556 Apis mellifera miR-3779
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcccg 7
||||||
Sbjct: 8 ggcccg 3
>ppy-miR-1291 MIMAT0016213 Pongo pygmaeus miR-1291
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>ppy-miR-663b MIMAT0016093 Pongo pygmaeus miR-663b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 3 tggccc 8
>ppy-miR-575 MIMAT0016016 Pongo pygmaeus miR-575
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggccc 6
||||||
Sbjct: 6 tggccc 1
>hsa-miR-3181 MIMAT0015061 Homo sapiens miR-3181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcccg 7
||||||
Sbjct: 8 ggcccg 3
>hsa-miR-3136-3p MIMAT0019203 Homo sapiens miR-3136-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>mmu-miR-3109-3p MIMAT0014950 Mus musculus miR-3109-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggccc 6
||||||
Sbjct: 8 tggccc 3
>mmu-miR-3091-3p MIMAT0014904 Mus musculus miR-3091-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcccg 7
||||||
Sbjct: 6 ggcccg 1
>eca-miR-1291a MIMAT0012968 Equus caballus miR-1291a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>bta-miR-2284s MIMAT0011811 Bos taurus miR-2284s
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>bta-miR-1291 MIMAT0009956 Bos taurus miR-1291
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>ptr-miR-663b MIMAT0008310 Pan troglodytes miR-663b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 3 tggccc 8
>ptr-miR-1291 MIMAT0008009 Pan troglodytes miR-1291
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>hsa-miR-1291 MIMAT0005881 Homo sapiens miR-1291
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
>hsa-miR-663b MIMAT0005867 Homo sapiens miR-663b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 3 tggccc 8
>ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggccc 6
||||||
Sbjct: 1 tggccc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 72
Number of extensions: 68
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)