BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-205a-2-3p MIMAT0032494 Salmo salar miR-205a-2-3p 14 20
ssa-miR-205a-3p MIMAT0032493 Salmo salar miR-205a-3p 14 20
dev-miR-D1-5p MIMAT0028169 Duck enteritis miR-D1-5p 14 20
hsa-miR-6716-5p MIMAT0025844 Homo sapiens miR-6716-5p 14 20
ptc-miR6427-3p MIMAT0025228 Populus trichocarpa miR6427-3p 14 20
ata-miR2118b-3p MIMAT0037221 Aegilops tauschii miR2118b-3p 12 80
ata-miR2118a-3p MIMAT0037181 Aegilops tauschii miR2118a-3p 12 80
ata-miR166b-5p MIMAT0037126 Aegilops tauschii miR166b-5p 12 80
oha-miR-204-1-3p MIMAT0036813 Ophiophagus hannah miR-204-1-3p 12 80
chi-miR-450-3p MIMAT0036236 Capra hircus miR-450-3p 12 80
chi-miR-204-3p MIMAT0036051 Capra hircus miR-204-3p 12 80
eca-miR-8965 MIMAT0034500 Equus caballus miR-8965 12 80
cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808 12 80
gra-miR482c MIMAT0034205 Gossypium raimondii miR482c 12 80
ppc-miR-8297-5p MIMAT0033111 Pristionchus pacificus miR-8297-5p 12 80
ppc-miR-8263-3p MIMAT0033011 Pristionchus pacificus miR-8263-3p 12 80
cel-miR-8187-5p MIMAT0032787 Caenorhabditis elegans miR-8187-5p 12 80
ssa-miR-459-3p MIMAT0032650 Salmo salar miR-459-3p 12 80
cpa-miR172b MIMAT0031811 Carica papaya miR172b 12 80
cpa-miR172a MIMAT0031810 Carica papaya miR172a 12 80
bbe-miR-4873-5p MIMAT0031696 Branchiostoma belcheri miR-4873-5p 12 80
hsa-miR-7977 MIMAT0031180 Homo sapiens miR-7977 12 80
bdi-miR7763-3p MIMAT0030273 Brachypodium distachyon miR7763-3p 12 80
bdi-miR395o-5p MIMAT0030093 Brachypodium distachyon miR395o-5p 12 80
mmu-miR-7684-5p MIMAT0029890 Mus musculus miR-7684-5p 12 80
gga-miR-7451-5p MIMAT0029056 Gallus gallus miR-7451-5p 12 80
mdo-miR-7249-3p MIMAT0028465 Monodelphis domestica miR-7249-3p 12 80
mdo-miR-7244-5p MIMAT0028454 Monodelphis domestica miR-7244-5p 12 80
ccr-miR-459-3p MIMAT0026305 Cyprinus carpio miR-459-3p 12 80
mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p 12 80
mmu-miR-7052-5p MIMAT0028008 Mus musculus miR-7052-5p 12 80
mmu-miR-6959-5p MIMAT0027818 Mus musculus miR-6959-5p 12 80
hsa-miR-6739-5p MIMAT0027379 Homo sapiens miR-6739-5p 12 80
hsa-miR-6733-5p MIMAT0027367 Homo sapiens miR-6733-5p 12 80
han-miR3630-3p MIMAT0025526 Helianthus annuus miR3630-3p 12 80
hbr-miR408b MIMAT0025289 Hevea brasiliensis miR408b 12 80
mmu-miR-6373 MIMAT0025117 Mus musculus miR-6373 12 80
mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352 12 80
hme-miR-1b MIMAT0024945 Heliconius melpomene miR-1b 12 80
ppe-miR482c-3p MIMAT0031169 Prunus persica miR482c-3p 12 80
osa-miR6255 MIMAT0024878 Oryza sativa miR6255 12 80
mse-miR-1b MIMAT0024493 Manduca sexta miR-1b 12 80
sha-miR-204 MIMAT0022790 Sarcophilus harrisii miR-204 12 80
vun-miR482 MIMAT0022766 Vigna unguiculata miR482 12 80
aca-miR-5467 MIMAT0022100 Anolis carolinensis miR-5467 12 80
aca-miR-204a-3p MIMAT0021854 Anolis carolinensis miR-204a-3p 12 80
osa-miR5072 MIMAT0020552 Oryza sativa miR5072 12 80
gma-miR482c-3p MIMAT0021002 Glycine max miR482c-3p 12 80
bfl-miR-4873 MIMAT0020452 Branchiostoma floridae miR-4873 12 80
hsa-miR-4646-5p MIMAT0019707 Homo sapiens miR-4646-5p 12 80
hsa-miR-4471 MIMAT0018998 Homo sapiens miR-4471 12 80
csi-miR472 MIMAT0018473 Citrus sinensis miR472 12 80
mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus miR-M1-13-5p 12 80
pab-miR3710 MIMAT0018143 Picea abies miR3710 12 80
vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p 12 80
cin-miR-4166-5p MIMAT0016774 Ciona intestinalis miR-4166-5p 12 80
rno-miR-3564 MIMAT0017837 Rattus norvegicus miR-3564 12 80
ssc-miR-450c-3p MIMAT0015718 Sus scrofa miR-450c-3p 12 80
esi-miR3454e-5p MIMAT0017769 Ectocarpus siliculosus miR3454e-5p 12 80
esi-miR3460-5p MIMAT0017761 Ectocarpus siliculosus miR3460-5p 12 80
esi-miR3454b-5p MIMAT0017759 Ectocarpus siliculosus miR3454b-5p 12 80
esi-miR3454c-5p MIMAT0017751 Ectocarpus siliculosus miR3454c-5p 12 80
esi-miR3454a-5p MIMAT0017747 Ectocarpus siliculosus miR3454a-5p 12 80
tgu-miR-2963-5p MIMAT0026961 Taeniopygia guttata miR-2963-5p 12 80
hsv2-miR-H9-3p MIMAT0014352 Herpes Simplex miR-H9-3p 12 80
bmo-miR-1b-3p MIMAT0013788 Bombyx mori miR-1b-3p 12 80
bmo-miR-2757-5p MIMAT0013627 Bombyx mori miR-2757-5p 12 80
dsi-miR-991-5p MIMAT0012429 Drosophila simulans miR-991-5p 12 80
dme-miR-2494-3p MIMAT0012203 Drosophila melanogaster miR-2494-3p 12 80
bta-miR-2447 MIMAT0012024 Bos taurus miR-2447 12 80
bta-miR-2370-5p MIMAT0011914 Bos taurus miR-2370-5p 12 80
zma-miR2118f MIMAT0011765 Zea mays miR2118f 12 80
osa-miR2118r MIMAT0011757 Oryza sativa miR2118r 12 80
osa-miR2118e MIMAT0011744 Oryza sativa miR2118e 12 80
pvu-miR482-3p MIMAT0011173 Phaseolus vulgaris miR482-3p 12 80
mdm-miR482a-3p MIMAT0011165 Malus domestica miR482a-3p 12 80
mmu-miR-1953 MIMAT0009424 Mus musculus miR-1953 12 80
ptr-miR-1292 MIMAT0008011 Pan troglodytes miR-1292 12 80
mml-miR-450a-1-3p MIMAT0026878 Macaca mulatta miR-450a-1-3p 12 80
gma-miR482a-3p MIMAT0007364 Glycine max miR482a-3p 12 80
ssy-miR-513c MIMAT0005758 Symphalangus syndactylus miR-513c 12 80
hsa-miR-1292-5p MIMAT0005943 Homo sapiens miR-1292-5p 12 80
ebv-miR-BART19-5p MIMAT0004836 Epstein Barr miR-BART19-5p 12 80
mmu-miR-450b-3p MIMAT0003512 Mus musculus miR-450b-3p 12 80
ptc-miR472b MIMAT0002061 Populus trichocarpa miR472b 12 80
dre-miR-459-3p MIMAT0003408 Danio rerio miR-459-3p 12 80
osa-miR438 MIMAT0001587 Oryza sativa miR438 12 80
mmu-miR-450a-1-3p MIMAT0017182 Mus musculus miR-450a-1-3p 12 80
hsa-miR-450a-1-3p MIMAT0022700 Homo sapiens miR-450a-1-3p 12 80
rno-miR-204-3p MIMAT0004739 Rattus norvegicus miR-204-3p 12 80
hsa-miR-204-3p MIMAT0022693 Homo sapiens miR-204-3p 12 80
mmu-miR-204-3p MIMAT0017002 Mus musculus miR-204-3p 12 80
>ssa-miR-205a-2-3p MIMAT0032494 Salmo salar miR-205a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgggaat 7
|||||||
Sbjct: 7 tgggaat 1
>ssa-miR-205a-3p MIMAT0032493 Salmo salar miR-205a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgggaat 7
|||||||
Sbjct: 7 tgggaat 1
>dev-miR-D1-5p MIMAT0028169 Duck enteritis miR-D1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggaat 7
|||||||
Sbjct: 2 tgggaat 8
>hsa-miR-6716-5p MIMAT0025844 Homo sapiens miR-6716-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggaat 7
|||||||
Sbjct: 1 tgggaat 7
>ptc-miR6427-3p MIMAT0025228 Populus trichocarpa miR6427-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggaat 7
|||||||
Sbjct: 2 tgggaat 8
>ata-miR2118b-3p MIMAT0037221 Aegilops tauschii miR2118b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>ata-miR2118a-3p MIMAT0037181 Aegilops tauschii miR2118a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>ata-miR166b-5p MIMAT0037126 Aegilops tauschii miR166b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>oha-miR-204-1-3p MIMAT0036813 Ophiophagus hannah miR-204-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>chi-miR-450-3p MIMAT0036236 Capra hircus miR-450-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>chi-miR-204-3p MIMAT0036051 Capra hircus miR-204-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>eca-miR-8965 MIMAT0034500 Equus caballus miR-8965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>gra-miR482c MIMAT0034205 Gossypium raimondii miR482c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>ppc-miR-8297-5p MIMAT0033111 Pristionchus pacificus miR-8297-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 6 gggaat 1
>ppc-miR-8263-3p MIMAT0033011 Pristionchus pacificus miR-8263-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>cel-miR-8187-5p MIMAT0032787 Caenorhabditis elegans miR-8187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>ssa-miR-459-3p MIMAT0032650 Salmo salar miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>cpa-miR172b MIMAT0031811 Carica papaya miR172b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>cpa-miR172a MIMAT0031810 Carica papaya miR172a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>bbe-miR-4873-5p MIMAT0031696 Branchiostoma belcheri miR-4873-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 8 tgggaa 3
>hsa-miR-7977 MIMAT0031180 Homo sapiens miR-7977
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>bdi-miR7763-3p MIMAT0030273 Brachypodium distachyon miR7763-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 6 gggaat 1
>bdi-miR395o-5p MIMAT0030093 Brachypodium distachyon miR395o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 6 gggaat 1
>mmu-miR-7684-5p MIMAT0029890 Mus musculus miR-7684-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>gga-miR-7451-5p MIMAT0029056 Gallus gallus miR-7451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>mdo-miR-7249-3p MIMAT0028465 Monodelphis domestica miR-7249-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>mdo-miR-7244-5p MIMAT0028454 Monodelphis domestica miR-7244-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>ccr-miR-459-3p MIMAT0026305 Cyprinus carpio miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>mmu-miR-7052-5p MIMAT0028008 Mus musculus miR-7052-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>mmu-miR-6959-5p MIMAT0027818 Mus musculus miR-6959-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>hsa-miR-6739-5p MIMAT0027379 Homo sapiens miR-6739-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>hsa-miR-6733-5p MIMAT0027367 Homo sapiens miR-6733-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>han-miR3630-3p MIMAT0025526 Helianthus annuus miR3630-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>hbr-miR408b MIMAT0025289 Hevea brasiliensis miR408b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>mmu-miR-6373 MIMAT0025117 Mus musculus miR-6373
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>hme-miR-1b MIMAT0024945 Heliconius melpomene miR-1b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>ppe-miR482c-3p MIMAT0031169 Prunus persica miR482c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>osa-miR6255 MIMAT0024878 Oryza sativa miR6255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>mse-miR-1b MIMAT0024493 Manduca sexta miR-1b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>sha-miR-204 MIMAT0022790 Sarcophilus harrisii miR-204
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>vun-miR482 MIMAT0022766 Vigna unguiculata miR482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 8 tgggaa 3
>aca-miR-5467 MIMAT0022100 Anolis carolinensis miR-5467
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>aca-miR-204a-3p MIMAT0021854 Anolis carolinensis miR-204a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>osa-miR5072 MIMAT0020552 Oryza sativa miR5072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 8 gggaat 3
>gma-miR482c-3p MIMAT0021002 Glycine max miR482c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>bfl-miR-4873 MIMAT0020452 Branchiostoma floridae miR-4873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 8 tgggaa 3
>hsa-miR-4646-5p MIMAT0019707 Homo sapiens miR-4646-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>hsa-miR-4471 MIMAT0018998 Homo sapiens miR-4471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>csi-miR472 MIMAT0018473 Citrus sinensis miR472
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 8 tgggaa 3
>mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus
miR-M1-13-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>pab-miR3710 MIMAT0018143 Picea abies miR3710
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>cin-miR-4166-5p MIMAT0016774 Ciona intestinalis miR-4166-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>rno-miR-3564 MIMAT0017837 Rattus norvegicus miR-3564
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>ssc-miR-450c-3p MIMAT0015718 Sus scrofa miR-450c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>esi-miR3454e-5p MIMAT0017769 Ectocarpus siliculosus miR3454e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>esi-miR3460-5p MIMAT0017761 Ectocarpus siliculosus miR3460-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>esi-miR3454b-5p MIMAT0017759 Ectocarpus siliculosus miR3454b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>esi-miR3454c-5p MIMAT0017751 Ectocarpus siliculosus miR3454c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>esi-miR3454a-5p MIMAT0017747 Ectocarpus siliculosus miR3454a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>tgu-miR-2963-5p MIMAT0026961 Taeniopygia guttata miR-2963-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 8 tgggaa 3
>hsv2-miR-H9-3p MIMAT0014352 Herpes Simplex miR-H9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>bmo-miR-1b-3p MIMAT0013788 Bombyx mori miR-1b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>bmo-miR-2757-5p MIMAT0013627 Bombyx mori miR-2757-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>dsi-miR-991-5p MIMAT0012429 Drosophila simulans miR-991-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>dme-miR-2494-3p MIMAT0012203 Drosophila melanogaster
miR-2494-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>bta-miR-2447 MIMAT0012024 Bos taurus miR-2447
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>bta-miR-2370-5p MIMAT0011914 Bos taurus miR-2370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>zma-miR2118f MIMAT0011765 Zea mays miR2118f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>osa-miR2118r MIMAT0011757 Oryza sativa miR2118r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>osa-miR2118e MIMAT0011744 Oryza sativa miR2118e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>pvu-miR482-3p MIMAT0011173 Phaseolus vulgaris miR482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 8 tgggaa 3
>mdm-miR482a-3p MIMAT0011165 Malus domestica miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>mmu-miR-1953 MIMAT0009424 Mus musculus miR-1953
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>ptr-miR-1292 MIMAT0008011 Pan troglodytes miR-1292
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>mml-miR-450a-1-3p MIMAT0026878 Macaca mulatta miR-450a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>gma-miR482a-3p MIMAT0007364 Glycine max miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 8 tgggaa 3
>ssy-miR-513c MIMAT0005758 Symphalangus syndactylus miR-513c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>hsa-miR-1292-5p MIMAT0005943 Homo sapiens miR-1292-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 1 tgggaa 6
>ebv-miR-BART19-5p MIMAT0004836 Epstein Barr miR-BART19-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 8 gggaat 3
>mmu-miR-450b-3p MIMAT0003512 Mus musculus miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>ptc-miR472b MIMAT0002061 Populus trichocarpa miR472b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 8 tgggaa 3
>dre-miR-459-3p MIMAT0003408 Danio rerio miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>osa-miR438 MIMAT0001587 Oryza sativa miR438
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggaa 6
||||||
Sbjct: 6 tgggaa 1
>mmu-miR-450a-1-3p MIMAT0017182 Mus musculus miR-450a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>hsa-miR-450a-1-3p MIMAT0022700 Homo sapiens miR-450a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>rno-miR-204-3p MIMAT0004739 Rattus norvegicus miR-204-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>hsa-miR-204-3p MIMAT0022693 Homo sapiens miR-204-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
>mmu-miR-204-3p MIMAT0017002 Mus musculus miR-204-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggaa 6
||||||
Sbjct: 3 tgggaa 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 127
Number of extensions: 122
Number of successful extensions: 92
Number of sequences better than 100.0: 92
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 92
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
