BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h12
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rmi-miR-5341 MIMAT0021414 Rhipicephalus microplus miR-5341 14 20
osa-miR3981-5p MIMAT0019683 Oryza sativa miR3981-5p 14 20
hsa-miR-4433a-5p MIMAT0020956 Homo sapiens miR-4433a-5p 14 20
hsv1-miR-H12 MIMAT0014689 Herpes Simplex miR-H12 14 20
mmu-miR-1963 MIMAT0009436 Mus musculus miR-1963 14 20
gga-miR-1670 MIMAT0007554 Gallus gallus miR-1670 14 20
bta-miR-4449 MIMAT0036973 Bos taurus miR-4449 12 80
rno-miR-149-3p MIMAT0035727 Rattus norvegicus miR-149-3p 12 80
gsa-miR-184b-3p MIMAT0035303 Gyrodactylus salaris miR-184b-3p 12 80
eca-miR-9065 MIMAT0034610 Equus caballus miR-9065 12 80
eca-miR-8924 MIMAT0034452 Equus caballus miR-8924 12 80
esi-miR8623c MIMAT0033958 Ectocarpus siliculosus miR8623c 12 80
str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p 12 80
str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p 12 80
ppc-miR-360-3p MIMAT0033130 Pristionchus pacificus miR-360-3p 12 80
cpa-miR398 MIMAT0031826 Carica papaya miR398 12 80
prd-miR-7961-3p MIMAT0030821 Panagrellus redivivus miR-7961-3p 12 80
hsa-miR-4433b-5p MIMAT0030413 Homo sapiens miR-4433b-5p 12 80
mdo-miR-7380-5p MIMAT0028816 Monodelphis domestica miR-7380-5p 12 80
mdo-miR-7361-5p MIMAT0028734 Monodelphis domestica miR-7361-5p 12 80
mmu-miR-6987-5p MIMAT0027876 Mus musculus miR-6987-5p 12 80
mml-miR-3122 MIMAT0024340 Macaca mulatta miR-3122 12 80
ame-miR-6056 MIMAT0023680 Apis mellifera miR-6056 12 80
hsa-miR-5588-3p MIMAT0022296 Homo sapiens miR-5588-3p 12 80
mtr-miR5285c MIMAT0021345 Medicago truncatula miR5285c 12 80
mtr-miR5285b MIMAT0021344 Medicago truncatula miR5285b 12 80
mtr-miR5285a MIMAT0021343 Medicago truncatula miR5285a 12 80
bdi-miR5178-5p MIMAT0027083 Brachypodium distachyon miR5178-5p 12 80
hsa-miR-4648 MIMAT0019710 Homo sapiens miR-4648 12 80
hsa-miR-4449 MIMAT0018968 Homo sapiens miR-4449 12 80
hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p 12 80
hsa-miR-3191-3p MIMAT0015075 Homo sapiens miR-3191-3p 12 80
hsa-miR-3122 MIMAT0014984 Homo sapiens miR-3122 12 80
tgu-miR-2966 MIMAT0014473 Taeniopygia guttata miR-2966 12 80
zma-miR408b-5p MIMAT0015360 Zea mays miR408b-5p 12 80
osa-miR2863a MIMAT0013809 Oryza sativa miR2863a 12 80
cte-miR-1990c-3p MIMAT0013548 Capitella teleta miR-1990c-3p 12 80
gga-miR-1683 MIMAT0007570 Gallus gallus miR-1683 12 80
gga-miR-1608 MIMAT0007474 Gallus gallus miR-1608 12 80
ppt-miR893 MIMAT0004364 Physcomitrella patens miR893 12 80
ppt-miR1212 MIMAT0003901 Physcomitrella patens miR1212 12 80
dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p 12 80
>rmi-miR-5341 MIMAT0021414 Rhipicephalus microplus miR-5341
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggacg 7
|||||||
Sbjct: 1 tgggacg 7
>osa-miR3981-5p MIMAT0019683 Oryza sativa miR3981-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggacg 7
|||||||
Sbjct: 1 tgggacg 7
>hsa-miR-4433a-5p MIMAT0020956 Homo sapiens miR-4433a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgggacg 7
|||||||
Sbjct: 7 tgggacg 1
>hsv1-miR-H12 MIMAT0014689 Herpes Simplex miR-H12
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggacg 7
|||||||
Sbjct: 2 tgggacg 8
>mmu-miR-1963 MIMAT0009436 Mus musculus miR-1963
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggacg 7
|||||||
Sbjct: 1 tgggacg 7
>gga-miR-1670 MIMAT0007554 Gallus gallus miR-1670
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggacg 7
|||||||
Sbjct: 2 tgggacg 8
>bta-miR-4449 MIMAT0036973 Bos taurus miR-4449
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggacg 7
||||||
Sbjct: 6 gggacg 1
>rno-miR-149-3p MIMAT0035727 Rattus norvegicus miR-149-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggacg 7
||||||
Sbjct: 1 gggacg 6
>gsa-miR-184b-3p MIMAT0035303 Gyrodactylus salaris miR-184b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggacg 7
||||||
Sbjct: 1 gggacg 6
>eca-miR-9065 MIMAT0034610 Equus caballus miR-9065
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>eca-miR-8924 MIMAT0034452 Equus caballus miR-8924
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>esi-miR8623c MIMAT0033958 Ectocarpus siliculosus miR8623c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggac 6
||||||
Sbjct: 6 tgggac 1
>str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>ppc-miR-360-3p MIMAT0033130 Pristionchus pacificus miR-360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggacg 7
||||||
Sbjct: 8 gggacg 3
>cpa-miR398 MIMAT0031826 Carica papaya miR398
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggacg 7
||||||
Sbjct: 1 gggacg 6
>prd-miR-7961-3p MIMAT0030821 Panagrellus redivivus miR-7961-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggac 6
||||||
Sbjct: 6 tgggac 1
>hsa-miR-4433b-5p MIMAT0030413 Homo sapiens miR-4433b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggac 6
||||||
Sbjct: 8 tgggac 3
>mdo-miR-7380-5p MIMAT0028816 Monodelphis domestica miR-7380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggac 6
||||||
Sbjct: 8 tgggac 3
>mdo-miR-7361-5p MIMAT0028734 Monodelphis domestica miR-7361-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>mmu-miR-6987-5p MIMAT0027876 Mus musculus miR-6987-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>mml-miR-3122 MIMAT0024340 Macaca mulatta miR-3122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>ame-miR-6056 MIMAT0023680 Apis mellifera miR-6056
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggacg 7
||||||
Sbjct: 3 gggacg 8
>hsa-miR-5588-3p MIMAT0022296 Homo sapiens miR-5588-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggac 6
||||||
Sbjct: 8 tgggac 3
>mtr-miR5285c MIMAT0021345 Medicago truncatula miR5285c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>mtr-miR5285b MIMAT0021344 Medicago truncatula miR5285b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>mtr-miR5285a MIMAT0021343 Medicago truncatula miR5285a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>bdi-miR5178-5p MIMAT0027083 Brachypodium distachyon miR5178-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>hsa-miR-4648 MIMAT0019710 Homo sapiens miR-4648
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>hsa-miR-4449 MIMAT0018968 Homo sapiens miR-4449
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggacg 7
||||||
Sbjct: 6 gggacg 1
>hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>hsa-miR-3191-3p MIMAT0015075 Homo sapiens miR-3191-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggacg 7
||||||
Sbjct: 3 gggacg 8
>hsa-miR-3122 MIMAT0014984 Homo sapiens miR-3122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>tgu-miR-2966 MIMAT0014473 Taeniopygia guttata miR-2966
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggacg 7
||||||
Sbjct: 3 gggacg 8
>zma-miR408b-5p MIMAT0015360 Zea mays miR408b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggacg 7
||||||
Sbjct: 3 gggacg 8
>osa-miR2863a MIMAT0013809 Oryza sativa miR2863a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggac 6
||||||
Sbjct: 8 tgggac 3
>cte-miR-1990c-3p MIMAT0013548 Capitella teleta miR-1990c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>gga-miR-1683 MIMAT0007570 Gallus gallus miR-1683
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>gga-miR-1608 MIMAT0007474 Gallus gallus miR-1608
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 1 tgggac 6
>ppt-miR893 MIMAT0004364 Physcomitrella patens miR893
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>ppt-miR1212 MIMAT0003901 Physcomitrella patens miR1212
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
>dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggac 6
||||||
Sbjct: 3 tgggac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 71
Number of extensions: 65
Number of successful extensions: 42
Number of sequences better than 100.0: 42
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 42
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
