BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b19-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B19-5p MIMAT0031769 Herpes B miR-B19-5p 14 20
mdo-miR-1544e-5p MIMAT0031033 Monodelphis domestica miR-1544e-5p 14 20
tca-miR-6009-3p MIMAT0023560 Tribolium castaneum miR-6009-3p 14 20
osa-miR1423-3p MIMAT0005957 Oryza sativa miR1423-3p 14 20
ata-miR399a-5p MIMAT0037240 Aegilops tauschii miR399a-5p 12 80
ata-miR399b-5p MIMAT0037198 Aegilops tauschii miR399b-5p 12 80
cel-miR-8208-5p MIMAT0032833 Caenorhabditis elegans miR-8208-5p 12 80
prd-miR-7927b-5p MIMAT0030644 Panagrellus redivivus miR-7927b-5p 12 80
mmu-miR-7658-5p MIMAT0029822 Mus musculus miR-7658-5p 12 80
mdo-miR-7346-5p MIMAT0028704 Monodelphis domestica miR-7346-5p 12 80
hsa-miR-6789-3p MIMAT0027479 Homo sapiens miR-6789-3p 12 80
hsa-miR-6729-5p MIMAT0027359 Homo sapiens miR-6729-5p 12 80
hsa-miR-6499-5p MIMAT0025450 Homo sapiens miR-6499-5p 12 80
tca-miR-6016-3p MIMAT0023574 Tribolium castaneum miR-6016-3p 12 80
mmu-miR-5131 MIMAT0020642 Mus musculus miR-5131 12 80
hsa-miR-4649-5p MIMAT0019711 Homo sapiens miR-4649-5p 12 80
hsa-miR-4486 MIMAT0019020 Homo sapiens miR-4486 12 80
pab-miR3700 MIMAT0018132 Picea abies miR3700 12 80
ppy-miR-566 MIMAT0016010 Pongo pygmaeus miR-566 12 80
aly-miR399b-5p MIMAT0017573 Arabidopsis lyrata miR399b-5p 12 80
dps-miR-2532 MIMAT0012321 Drosophila pseudoobscura miR-2532 12 80
ptr-miR-566 MIMAT0008244 Pan troglodytes miR-566 12 80
cel-miR-1832a-3p MIMAT0006774 Caenorhabditis elegans miR-1832a-3p 12 80
hsa-miR-1292-3p MIMAT0022948 Homo sapiens miR-1292-3p 12 80
ppt-miR1073-3p MIMAT0005203 Physcomitrella patens miR1073-3p 12 80
hsa-miR-585-3p MIMAT0003250 Homo sapiens miR-585-3p 12 80
hsa-miR-566 MIMAT0003230 Homo sapiens miR-566 12 80
zma-miR162-5p MIMAT0015147 Zea mays miR162-5p 12 80
>hbv-miR-B19-5p MIMAT0031769 Herpes B miR-B19-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggcgc 7
|||||||
Sbjct: 2 tgggcgc 8
>mdo-miR-1544e-5p MIMAT0031033 Monodelphis domestica
miR-1544e-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgggcgc 7
|||||||
Sbjct: 7 tgggcgc 1
>tca-miR-6009-3p MIMAT0023560 Tribolium castaneum miR-6009-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggcgc 7
|||||||
Sbjct: 2 tgggcgc 8
>osa-miR1423-3p MIMAT0005957 Oryza sativa miR1423-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgggcgc 7
|||||||
Sbjct: 8 tgggcgc 2
>ata-miR399a-5p MIMAT0037240 Aegilops tauschii miR399a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 1 gggcgc 6
>ata-miR399b-5p MIMAT0037198 Aegilops tauschii miR399b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 3 gggcgc 8
>cel-miR-8208-5p MIMAT0032833 Caenorhabditis elegans miR-8208-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggcg 6
||||||
Sbjct: 8 tgggcg 3
>prd-miR-7927b-5p MIMAT0030644 Panagrellus redivivus
miR-7927b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 3 gggcgc 8
>mmu-miR-7658-5p MIMAT0029822 Mus musculus miR-7658-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggcg 6
||||||
Sbjct: 3 tgggcg 8
>mdo-miR-7346-5p MIMAT0028704 Monodelphis domestica miR-7346-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 3 gggcgc 8
>hsa-miR-6789-3p MIMAT0027479 Homo sapiens miR-6789-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggcgc 7
||||||
Sbjct: 8 gggcgc 3
>hsa-miR-6729-5p MIMAT0027359 Homo sapiens miR-6729-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggcg 6
||||||
Sbjct: 1 tgggcg 6
>hsa-miR-6499-5p MIMAT0025450 Homo sapiens miR-6499-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 3 gggcgc 8
>tca-miR-6016-3p MIMAT0023574 Tribolium castaneum miR-6016-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggcg 6
||||||
Sbjct: 8 tgggcg 3
>mmu-miR-5131 MIMAT0020642 Mus musculus miR-5131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggcgc 7
||||||
Sbjct: 8 gggcgc 3
>hsa-miR-4649-5p MIMAT0019711 Homo sapiens miR-4649-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggcg 6
||||||
Sbjct: 1 tgggcg 6
>hsa-miR-4486 MIMAT0019020 Homo sapiens miR-4486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggcg 6
||||||
Sbjct: 3 tgggcg 8
>pab-miR3700 MIMAT0018132 Picea abies miR3700
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggcg 6
||||||
Sbjct: 8 tgggcg 3
>ppy-miR-566 MIMAT0016010 Pongo pygmaeus miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 1 gggcgc 6
>aly-miR399b-5p MIMAT0017573 Arabidopsis lyrata miR399b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 1 gggcgc 6
>dps-miR-2532 MIMAT0012321 Drosophila pseudoobscura miR-2532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggcg 6
||||||
Sbjct: 1 tgggcg 6
>ptr-miR-566 MIMAT0008244 Pan troglodytes miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 1 gggcgc 6
>cel-miR-1832a-3p MIMAT0006774 Caenorhabditis elegans
miR-1832a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggcg 6
||||||
Sbjct: 1 tgggcg 6
>hsa-miR-1292-3p MIMAT0022948 Homo sapiens miR-1292-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggcgc 7
||||||
Sbjct: 8 gggcgc 3
>ppt-miR1073-3p MIMAT0005203 Physcomitrella patens miR1073-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggcg 6
||||||
Sbjct: 1 tgggcg 6
>hsa-miR-585-3p MIMAT0003250 Homo sapiens miR-585-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggcg 6
||||||
Sbjct: 1 tgggcg 6
>hsa-miR-566 MIMAT0003230 Homo sapiens miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 1 gggcgc 6
>zma-miR162-5p MIMAT0015147 Zea mays miR162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggcgc 7
||||||
Sbjct: 1 gggcgc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 41
Number of extensions: 37
Number of successful extensions: 28
Number of sequences better than 100.0: 28
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 28
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
