BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-61-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-6989-5p MIMAT0027880 Mus musculus miR-6989-5p 14 20
hsa-miR-6810-5p MIMAT0027520 Homo sapiens miR-6810-5p 14 20
gga-miR-6615-5p MIMAT0025710 Gallus gallus miR-6615-5p 14 20
hsa-miR-3191-3p MIMAT0015075 Homo sapiens miR-3191-3p 14 20
peu-miR2916 MIMAT0012884 Populus euphratica miR2916 14 20
tca-miR-317-5p MIMAT0019130 Tribolium castaneum miR-317-5p 14 20
ath-miR447c-3p MIMAT0002115 Arabidopsis thaliana miR447c-3p 14 20
ath-miR447b MIMAT0002114 Arabidopsis thaliana miR447b 14 20
ath-miR447a-3p MIMAT0002113 Arabidopsis thaliana miR447a-3p 14 20
tch-miR-491-5p MIMAT0036566 Tupaia chinensis miR-491-5p 12 80
chi-miR-491-5p MIMAT0036251 Capra hircus miR-491-5p 12 80
rno-miR-450b-3p MIMAT0035747 Rattus norvegicus miR-450b-3p 12 80
efu-miR-9272 MIMAT0034905 Eptesicus fuscus miR-9272 12 80
gra-miR8735 MIMAT0034147 Gossypium raimondii miR8735 12 80
ssa-miR-204-4-3p MIMAT0032491 Salmo salar miR-204-4-3p 12 80
ssa-miR-204-3-3p MIMAT0032490 Salmo salar miR-204-3-3p 12 80
mmu-miR-8108 MIMAT0031413 Mus musculus miR-8108 12 80
stu-miR408b-5p MIMAT0031339 Solanum tuberosum miR408b-5p 12 80
hsa-miR-8089 MIMAT0031016 Homo sapiens miR-8089 12 80
tgu-miR-7645-5p MIMAT0029790 Taeniopygia guttata miR-7645-5p 12 80
mmu-miR-7118-5p MIMAT0028133 Mus musculus miR-7118-5p 12 80
mmu-miR-7053-5p MIMAT0028010 Mus musculus miR-7053-5p 12 80
mmu-miR-7030-5p MIMAT0027964 Mus musculus miR-7030-5p 12 80
mmu-miR-7005-5p MIMAT0027914 Mus musculus miR-7005-5p 12 80
mmu-miR-7003-5p MIMAT0027910 Mus musculus miR-7003-5p 12 80
mmu-miR-6975-5p MIMAT0027852 Mus musculus miR-6975-5p 12 80
hsa-miR-6780b-5p MIMAT0027572 Homo sapiens miR-6780b-5p 12 80
hsa-miR-6825-5p MIMAT0027550 Homo sapiens miR-6825-5p 12 80
hsa-miR-6793-3p MIMAT0027487 Homo sapiens miR-6793-3p 12 80
gga-miR-6622-3p MIMAT0025825 Gallus gallus miR-6622-3p 12 80
mmu-miR-6356 MIMAT0025099 Mus musculus miR-6356 12 80
hme-miR-133 MIMAT0024938 Heliconius melpomene miR-133 12 80
hvu-miR6194 MIMAT0024820 Hordeum vulgare miR6194 12 80
mml-miR-4667 MIMAT0024333 Macaca mulatta miR-4667 12 80
ggo-miR-491 MIMAT0024196 Gorilla gorilla miR-491 12 80
ptr-miR-4667 MIMAT0024060 Pan troglodytes miR-4667 12 80
hco-miR-5910 MIMAT0023366 Haemonchus contortus miR-5910 12 80
ola-miR-133-3p MIMAT0022560 Oryzias latipes miR-133-3p 12 80
rgl-miR164 MIMAT0023004 Rehmannia glutinosa miR164 12 80
sbi-miR5564a MIMAT0022241 Sorghum bicolor miR5564a 12 80
sly-miR5300 MIMAT0020764 Solanum lycopersicum miR5300 12 80
bdi-miR5054 MIMAT0020763 Brachypodium distachyon miR5054 12 80
mmu-miR-3572-5p MIMAT0022986 Mus musculus miR-3572-5p 12 80
ssc-miR-491 MIMAT0020592 Sus scrofa miR-491 12 80
gma-miR5043 MIMAT0021074 Glycine max miR5043 12 80
sko-miR-4825-5p MIMAT0020030 Saccoglossus kowalevskii miR-4825-5p 12 80
hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p 12 80
hsa-miR-4700-5p MIMAT0019796 Homo sapiens miR-4700-5p 12 80
hsa-miR-1343-5p MIMAT0027038 Homo sapiens miR-1343-5p 12 80
hsa-miR-4667-5p MIMAT0019743 Homo sapiens miR-4667-5p 12 80
hsa-miR-4450 MIMAT0018971 Homo sapiens miR-4450 12 80
ppy-miR-939 MIMAT0016139 Pongo pygmaeus miR-939 12 80
ppy-miR-612 MIMAT0016053 Pongo pygmaeus miR-612 12 80
ppy-miR-491-5p MIMAT0015911 Pongo pygmaeus miR-491-5p 12 80
tgu-miR-2954-3p MIMAT0014474 Taeniopygia guttata miR-2954-3p 12 80
gga-miR-2954 MIMAT0014448 Gallus gallus miR-2954 12 80
bta-miR-2889 MIMAT0013847 Bos taurus miR-2889 12 80
eca-miR-491-5p MIMAT0013116 Equus caballus miR-491-5p 12 80
bta-miR-2389 MIMAT0011942 Bos taurus miR-2389 12 80
bta-miR-1343-5p MIMAT0011839 Bos taurus miR-1343-5p 12 80
ppc-miR-2247 MIMAT0011735 Pristionchus pacificus miR-2247 12 80
bfl-miR-133 MIMAT0009484 Branchiostoma floridae miR-133 12 80
bta-miR-491 MIMAT0009332 Bos taurus miR-491 12 80
ptr-miR-939 MIMAT0008346 Pan troglodytes miR-939 12 80
cel-miR-1829a-5p MIMAT0015267 Caenorhabditis elegans miR-1829a-5p 12 80
mml-miR-939 MIMAT0006540 Macaca mulatta miR-939 12 80
mml-miR-491-5p MIMAT0006352 Macaca mulatta miR-491-5p 12 80
mml-miR-450a-2-3p MIMAT0031019 Macaca mulatta miR-450a-2-3p 12 80
oan-miR-1343-5p MIMAT0006874 Ornithorhynchus anatinus miR-1343-5p 12 80
hsa-miR-939-5p MIMAT0004982 Homo sapiens miR-939-5p 12 80
rrv-miR-rR1-4-5p MIMAT0004410 Rhesus monkey miR-rR1-4-5p 12 80
mmu-miR-491-5p MIMAT0003486 Mus musculus miR-491-5p 12 80
dre-miR-139-3p MIMAT0032008 Danio rerio miR-139-3p 12 80
mmu-miR-450a-2-3p MIMAT0004789 Mus musculus miR-450a-2-3p 12 80
hsa-miR-450a-2-3p MIMAT0031074 Homo sapiens miR-450a-2-3p 12 80
hsa-miR-491-5p MIMAT0002807 Homo sapiens miR-491-5p 12 80
mml-miR-133a MIMAT0002244 Macaca mulatta miR-133a 12 80
ppy-miR-133a MIMAT0002242 Pongo pygmaeus miR-133a 12 80
>mmu-miR-6989-5p MIMAT0027880 Mus musculus miR-6989-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 2 tggggac 8
>hsa-miR-6810-5p MIMAT0027520 Homo sapiens miR-6810-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 2 tggggac 8
>gga-miR-6615-5p MIMAT0025710 Gallus gallus miR-6615-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 2 tggggac 8
>hsa-miR-3191-3p MIMAT0015075 Homo sapiens miR-3191-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 1 tggggac 7
>peu-miR2916 MIMAT0012884 Populus euphratica miR2916
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 1 tggggac 7
>tca-miR-317-5p MIMAT0019130 Tribolium castaneum miR-317-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 1 tggggac 7
>ath-miR447c-3p MIMAT0002115 Arabidopsis thaliana miR447c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 2 tggggac 8
>ath-miR447b MIMAT0002114 Arabidopsis thaliana miR447b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 2 tggggac 8
>ath-miR447a-3p MIMAT0002113 Arabidopsis thaliana miR447a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggac 7
|||||||
Sbjct: 2 tggggac 8
>tch-miR-491-5p MIMAT0036566 Tupaia chinensis miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>chi-miR-491-5p MIMAT0036251 Capra hircus miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>rno-miR-450b-3p MIMAT0035747 Rattus norvegicus miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>efu-miR-9272 MIMAT0034905 Eptesicus fuscus miR-9272
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 6 tgggga 1
>gra-miR8735 MIMAT0034147 Gossypium raimondii miR8735
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggac 7
||||||
Sbjct: 1 ggggac 6
>ssa-miR-204-4-3p MIMAT0032491 Salmo salar miR-204-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>ssa-miR-204-3-3p MIMAT0032490 Salmo salar miR-204-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>mmu-miR-8108 MIMAT0031413 Mus musculus miR-8108
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>stu-miR408b-5p MIMAT0031339 Solanum tuberosum miR408b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggac 7
||||||
Sbjct: 3 ggggac 8
>hsa-miR-8089 MIMAT0031016 Homo sapiens miR-8089
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>tgu-miR-7645-5p MIMAT0029790 Taeniopygia guttata miR-7645-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggac 7
||||||
Sbjct: 6 ggggac 1
>mmu-miR-7118-5p MIMAT0028133 Mus musculus miR-7118-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>mmu-miR-7053-5p MIMAT0028010 Mus musculus miR-7053-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>mmu-miR-7030-5p MIMAT0027964 Mus musculus miR-7030-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>mmu-miR-7005-5p MIMAT0027914 Mus musculus miR-7005-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>mmu-miR-7003-5p MIMAT0027910 Mus musculus miR-7003-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>mmu-miR-6975-5p MIMAT0027852 Mus musculus miR-6975-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>hsa-miR-6780b-5p MIMAT0027572 Homo sapiens miR-6780b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>hsa-miR-6825-5p MIMAT0027550 Homo sapiens miR-6825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>hsa-miR-6793-3p MIMAT0027487 Homo sapiens miR-6793-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 6 tgggga 1
>gga-miR-6622-3p MIMAT0025825 Gallus gallus miR-6622-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>mmu-miR-6356 MIMAT0025099 Mus musculus miR-6356
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 6 tgggga 1
>hme-miR-133 MIMAT0024938 Heliconius melpomene miR-133
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggac 7
||||||
Sbjct: 8 ggggac 3
>hvu-miR6194 MIMAT0024820 Hordeum vulgare miR6194
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>mml-miR-4667 MIMAT0024333 Macaca mulatta miR-4667
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>ggo-miR-491 MIMAT0024196 Gorilla gorilla miR-491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>ptr-miR-4667 MIMAT0024060 Pan troglodytes miR-4667
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>hco-miR-5910 MIMAT0023366 Haemonchus contortus miR-5910
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 8 tgggga 3
>ola-miR-133-3p MIMAT0022560 Oryzias latipes miR-133-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggac 7
||||||
Sbjct: 8 ggggac 3
>rgl-miR164 MIMAT0023004 Rehmannia glutinosa miR164
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>sbi-miR5564a MIMAT0022241 Sorghum bicolor miR5564a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>sly-miR5300 MIMAT0020764 Solanum lycopersicum miR5300
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 6 tgggga 1
>bdi-miR5054 MIMAT0020763 Brachypodium distachyon miR5054
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 6 tgggga 1
>mmu-miR-3572-5p MIMAT0022986 Mus musculus miR-3572-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>ssc-miR-491 MIMAT0020592 Sus scrofa miR-491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>gma-miR5043 MIMAT0021074 Glycine max miR5043
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggac 7
||||||
Sbjct: 7 ggggac 2
>sko-miR-4825-5p MIMAT0020030 Saccoglossus kowalevskii
miR-4825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggac 7
||||||
Sbjct: 1 ggggac 6
>hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>hsa-miR-4700-5p MIMAT0019796 Homo sapiens miR-4700-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>hsa-miR-1343-5p MIMAT0027038 Homo sapiens miR-1343-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>hsa-miR-4667-5p MIMAT0019743 Homo sapiens miR-4667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>hsa-miR-4450 MIMAT0018971 Homo sapiens miR-4450
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>ppy-miR-939 MIMAT0016139 Pongo pygmaeus miR-939
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>ppy-miR-612 MIMAT0016053 Pongo pygmaeus miR-612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>ppy-miR-491-5p MIMAT0015911 Pongo pygmaeus miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>tgu-miR-2954-3p MIMAT0014474 Taeniopygia guttata miR-2954-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 8 tgggga 3
>gga-miR-2954 MIMAT0014448 Gallus gallus miR-2954
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 8 tgggga 3
>bta-miR-2889 MIMAT0013847 Bos taurus miR-2889
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggac 7
||||||
Sbjct: 6 ggggac 1
>eca-miR-491-5p MIMAT0013116 Equus caballus miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>bta-miR-2389 MIMAT0011942 Bos taurus miR-2389
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggac 7
||||||
Sbjct: 3 ggggac 8
>bta-miR-1343-5p MIMAT0011839 Bos taurus miR-1343-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>ppc-miR-2247 MIMAT0011735 Pristionchus pacificus miR-2247
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggga 6
||||||
Sbjct: 8 tgggga 3
>bfl-miR-133 MIMAT0009484 Branchiostoma floridae miR-133
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggac 7
||||||
Sbjct: 8 ggggac 3
>bta-miR-491 MIMAT0009332 Bos taurus miR-491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>ptr-miR-939 MIMAT0008346 Pan troglodytes miR-939
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>cel-miR-1829a-5p MIMAT0015267 Caenorhabditis elegans
miR-1829a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggac 7
||||||
Sbjct: 3 ggggac 8
>mml-miR-939 MIMAT0006540 Macaca mulatta miR-939
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>mml-miR-491-5p MIMAT0006352 Macaca mulatta miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>mml-miR-450a-2-3p MIMAT0031019 Macaca mulatta miR-450a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>oan-miR-1343-5p MIMAT0006874 Ornithorhynchus anatinus
miR-1343-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggac 7
||||||
Sbjct: 3 ggggac 8
>hsa-miR-939-5p MIMAT0004982 Homo sapiens miR-939-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>rrv-miR-rR1-4-5p MIMAT0004410 Rhesus monkey miR-rR1-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>mmu-miR-491-5p MIMAT0003486 Mus musculus miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>dre-miR-139-3p MIMAT0032008 Danio rerio miR-139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>mmu-miR-450a-2-3p MIMAT0004789 Mus musculus miR-450a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>hsa-miR-450a-2-3p MIMAT0031074 Homo sapiens miR-450a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>hsa-miR-491-5p MIMAT0002807 Homo sapiens miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 3 tgggga 8
>mml-miR-133a MIMAT0002244 Macaca mulatta miR-133a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggac 7
||||||
Sbjct: 8 ggggac 3
>ppy-miR-133a MIMAT0002242 Pongo pygmaeus miR-133a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggac 7
||||||
Sbjct: 8 ggggac 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 112
Number of extensions: 103
Number of successful extensions: 78
Number of sequences better than 100.0: 78
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 78
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)