BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7030-5p MIMAT0027964 Mus musculus miR-7030-5p 16 6.9
hsa-miR-6825-5p MIMAT0027550 Homo sapiens miR-6825-5p 16 6.9
hco-miR-5910 MIMAT0023366 Haemonchus contortus miR-5910 16 6.9
rrv-miR-rR1-4-5p MIMAT0004410 Rhesus monkey miR-rR1-4-5p 16 6.9
dre-miR-139-3p MIMAT0032008 Danio rerio miR-139-3p 16 6.9
ssa-miR-30e-3-3p MIMAT0032613 Salmo salar miR-30e-3-3p 14 27
mmu-miR-8093 MIMAT0031394 Mus musculus miR-8093 14 27
mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p 14 27
mmu-miR-7075-5p MIMAT0028056 Mus musculus miR-7075-5p 14 27
mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p 14 27
hsa-miR-6799-5p MIMAT0027498 Homo sapiens miR-6799-5p 14 27
hsa-miR-6763-5p MIMAT0027426 Homo sapiens miR-6763-5p 14 27
hsa-miR-1343-5p MIMAT0027038 Homo sapiens miR-1343-5p 14 27
mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971 14 27
ppy-miR-939 MIMAT0016139 Pongo pygmaeus miR-939 14 27
hsa-miR-3150a-3p MIMAT0015023 Homo sapiens miR-3150a-3p 14 27
bta-miR-1343-5p MIMAT0011839 Bos taurus miR-1343-5p 14 27
ppc-miR-2247 MIMAT0011735 Pristionchus pacificus miR-2247 14 27
ptr-miR-939 MIMAT0008346 Pan troglodytes miR-939 14 27
mml-miR-939 MIMAT0006540 Macaca mulatta miR-939 14 27
mml-miR-612 MIMAT0006464 Macaca mulatta miR-612 14 27
oan-miR-1408 MIMAT0007225 Ornithorhynchus anatinus miR-1408 14 27
hsa-miR-939-5p MIMAT0004982 Homo sapiens miR-939-5p 14 27
>mmu-miR-7030-5p MIMAT0027964 Mus musculus miR-7030-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggggagg 8
||||||||
Sbjct: 1 tggggagg 8
>hsa-miR-6825-5p MIMAT0027550 Homo sapiens miR-6825-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggggagg 8
||||||||
Sbjct: 1 tggggagg 8
>hco-miR-5910 MIMAT0023366 Haemonchus contortus miR-5910
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tggggagg 8
||||||||
Sbjct: 8 tggggagg 1
>rrv-miR-rR1-4-5p MIMAT0004410 Rhesus monkey miR-rR1-4-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggggagg 8
||||||||
Sbjct: 1 tggggagg 8
>dre-miR-139-3p MIMAT0032008 Danio rerio miR-139-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggggagg 8
||||||||
Sbjct: 1 tggggagg 8
>ssa-miR-30e-3-3p MIMAT0032613 Salmo salar miR-30e-3-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 2 tggggag 8
>mmu-miR-8093 MIMAT0031394 Mus musculus miR-8093
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 2 tggggag 8
>mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggagg 8
|||||||
Sbjct: 2 ggggagg 8
>mmu-miR-7075-5p MIMAT0028056 Mus musculus miR-7075-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggagg 8
|||||||
Sbjct: 2 ggggagg 8
>mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggagg 8
|||||||
Sbjct: 1 ggggagg 7
>hsa-miR-6799-5p MIMAT0027498 Homo sapiens miR-6799-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggagg 8
|||||||
Sbjct: 1 ggggagg 7
>hsa-miR-6763-5p MIMAT0027426 Homo sapiens miR-6763-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 2 tggggag 8
>hsa-miR-1343-5p MIMAT0027038 Homo sapiens miR-1343-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 1 tggggag 7
>mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggggag 7
|||||||
Sbjct: 7 tggggag 1
>ppy-miR-939 MIMAT0016139 Pongo pygmaeus miR-939
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 1 tggggag 7
>hsa-miR-3150a-3p MIMAT0015023 Homo sapiens miR-3150a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 2 tggggag 8
>bta-miR-1343-5p MIMAT0011839 Bos taurus miR-1343-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 1 tggggag 7
>ppc-miR-2247 MIMAT0011735 Pristionchus pacificus miR-2247
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggggag 7
|||||||
Sbjct: 8 tggggag 2
>ptr-miR-939 MIMAT0008346 Pan troglodytes miR-939
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 1 tggggag 7
>mml-miR-939 MIMAT0006540 Macaca mulatta miR-939
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 1 tggggag 7
>mml-miR-612 MIMAT0006464 Macaca mulatta miR-612
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 2 tggggag 8
>oan-miR-1408 MIMAT0007225 Ornithorhynchus anatinus miR-1408
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggagg 8
|||||||
Sbjct: 2 ggggagg 8
>hsa-miR-939-5p MIMAT0004982 Homo sapiens miR-939-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggggag 7
|||||||
Sbjct: 1 tggggag 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 216
Number of extensions: 188
Number of successful extensions: 149
Number of sequences better than 100.0: 23
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 23
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
