BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-9
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
str-miR-8380-5p MIMAT0033416 Strongyloides ratti miR-8380-5p 14 20
prd-miR-61-5p MIMAT0030578 Panagrellus redivivus miR-61-5p 14 20
hsa-miR-5591-3p MIMAT0022302 Homo sapiens miR-5591-3p 14 20
cin-miR-4083-5p MIMAT0016655 Ciona intestinalis miR-4083-5p 14 20
cqu-miR-1174 MIMAT0014354 Culex quinquefasciatus miR-1174 14 20
bmo-miR-279b-5p MIMAT0013608 Bombyx mori miR-279b-5p 14 20
dsi-miR-1003-5p MIMAT0012427 Drosophila simulans miR-1003-5p 14 20
dme-miR-1003-5p MIMAT0020902 Drosophila melanogaster miR-1003-5p 14 20
kshv-miR-K12-9-3p MIMAT0002185 Kaposi sarcoma-associated miR-K12... 14 20
oha-miR-1c-3p MIMAT0036802 Ophiophagus hannah miR-1c-3p 12 80
oha-miR-137-5p MIMAT0036708 Ophiophagus hannah miR-137-5p 12 80
chi-miR-660 MIMAT0036284 Capra hircus miR-660 12 80
efu-miR-660 MIMAT0035154 Eptesicus fuscus miR-660 12 80
eca-miR-8908g MIMAT0034708 Equus caballus miR-8908g 12 80
eca-miR-8908e MIMAT0034702 Equus caballus miR-8908e 12 80
eca-miR-8908k MIMAT0034694 Equus caballus miR-8908k 12 80
cfa-miR-8891 MIMAT0034398 Canis familiaris miR-8891 12 80
ssa-miR-729-3p MIMAT0032678 Salmo salar miR-729-3p 12 80
ssa-miR-137-5p MIMAT0032350 Salmo salar miR-137-5p 12 80
mdo-miR-137b-5p MIMAT0028552 Monodelphis domestica miR-137b-5p 12 80
bma-miR-5882a MIMAT0026385 Brugia malayi miR-5882a 12 80
ccr-miR-729 MIMAT0026316 Cyprinus carpio miR-729 12 80
mmu-miR-7066-3p MIMAT0028037 Mus musculus miR-7066-3p 12 80
hsa-miR-6861-5p MIMAT0027623 Homo sapiens miR-6861-5p 12 80
hbr-miR6167 MIMAT0024785 Hevea brasiliensis miR6167 12 80
ggo-miR-660 MIMAT0024164 Gorilla gorilla miR-660 12 80
ptr-miR-3132 MIMAT0024058 Pan troglodytes miR-3132 12 80
cgr-miR-137-5p MIMAT0023762 Cricetulus griseus miR-137-5p 12 80
ame-miR-6000a-5p MIMAT0023539 Apis mellifera miR-6000a-5p 12 80
ola-miR-729 MIMAT0022662 Oryzias latipes miR-729 12 80
tur-miR-317-5p MIMAT0023060 Tetranychus urticae miR-317-5p 12 80
aca-miR-137b-5p MIMAT0021755 Anolis carolinensis miR-137b-5p 12 80
asu-miR-5354-5p MIMAT0021568 Ascaris suum miR-5354-5p 12 80
dme-miR-4954-5p MIMAT0020169 Drosophila melanogaster miR-4954-5p 12 80
pma-miR-137-2-5p MIMAT0019468 Petromyzon marinus miR-137-2-5p 12 80
ppy-miR-1912 MIMAT0016240 Pongo pygmaeus miR-1912 12 80
ppy-miR-660 MIMAT0016092 Pongo pygmaeus miR-660 12 80
esi-miR3454g-5p MIMAT0017745 Ectocarpus siliculosus miR3454g-5p 12 80
aly-miR774a-3p.1 MIMAT0017596 Arabidopsis lyrata miR774a-3p.1 12 80
hsa-miR-3132 MIMAT0014997 Homo sapiens miR-3132 12 80
hsa-miR-3130-5p MIMAT0014995 Homo sapiens miR-3130-5p 12 80
hma-miR-3007-3p MIMAT0014675 Hydra magnipapillata miR-3007-3p 12 80
tgu-miR-137-5p MIMAT0026995 Taeniopygia guttata miR-137-5p 12 80
eca-miR-660 MIMAT0013241 Equus caballus miR-660 12 80
eca-miR-1912 MIMAT0013201 Equus caballus miR-1912 12 80
mtr-miR2599 MIMAT0013302 Medicago truncatula miR2599 12 80
dsi-miR-1001-5p MIMAT0012506 Drosophila simulans miR-1001-5p 12 80
aqu-miR-2020-5p MIMAT0009698 Amphimedon queenslandica miR-2020-5p 12 80
ptr-miR-660 MIMAT0008308 Pan troglodytes miR-660 12 80
hsa-miR-1912 MIMAT0007887 Homo sapiens miR-1912 12 80
cfa-miR-660 MIMAT0006760 Canis familiaris miR-660 12 80
mml-miR-660-5p MIMAT0006499 Macaca mulatta miR-660-5p 12 80
mml-miR-137-5p MIMAT0026821 Macaca mulatta miR-137-5p 12 80
oan-miR-137b-5p MIMAT0026753 Ornithorhynchus anatinus miR-137b-5p 12 80
oan-miR-137a-5p MIMAT0006837 Ornithorhynchus anatinus miR-137a-5p 12 80
ptr-miR-510 MIMAT0005775 Pan troglodytes miR-510 12 80
mmu-miR-1b-3p MIMAT0017326 Mus musculus miR-1b-3p 12 80
cre-miR1144b MIMAT0005435 Chlamydomonas reinhardtii miR1144b 12 80
dme-miR-1012-5p MIMAT0020906 Drosophila melanogaster miR-1012-5p 12 80
dme-miR-1001-5p MIMAT0005521 Drosophila melanogaster miR-1001-5p 12 80
bta-miR-660 MIMAT0004344 Bos taurus miR-660 12 80
mdo-miR-10b-5p MIMAT0004090 Monodelphis domestica miR-10b-5p 12 80
dre-miR-729 MIMAT0003758 Danio rerio miR-729 12 80
hsa-miR-660-5p MIMAT0003338 Homo sapiens miR-660-5p 12 80
hsa-miR-503-3p MIMAT0022925 Homo sapiens miR-503-3p 12 80
dre-miR-137-5p MIMAT0031972 Danio rerio miR-137-5p 12 80
gga-miR-137-5p MIMAT0026523 Gallus gallus miR-137-5p 12 80
rno-miR-137-5p MIMAT0017126 Rattus norvegicus miR-137-5p 12 80
mmu-miR-137-5p MIMAT0016986 Mus musculus miR-137-5p 12 80
>str-miR-8380-5p MIMAT0033416 Strongyloides ratti miR-8380-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggtat 7
|||||||
Sbjct: 1 tgggtat 7
>prd-miR-61-5p MIMAT0030578 Panagrellus redivivus miR-61-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggtat 7
|||||||
Sbjct: 2 tgggtat 8
>hsa-miR-5591-3p MIMAT0022302 Homo sapiens miR-5591-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgggtat 7
|||||||
Sbjct: 7 tgggtat 1
>cin-miR-4083-5p MIMAT0016655 Ciona intestinalis miR-4083-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggtat 7
|||||||
Sbjct: 2 tgggtat 8
>cqu-miR-1174 MIMAT0014354 Culex quinquefasciatus miR-1174
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggtat 7
|||||||
Sbjct: 2 tgggtat 8
>bmo-miR-279b-5p MIMAT0013608 Bombyx mori miR-279b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggtat 7
|||||||
Sbjct: 2 tgggtat 8
>dsi-miR-1003-5p MIMAT0012427 Drosophila simulans miR-1003-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggtat 7
|||||||
Sbjct: 2 tgggtat 8
>dme-miR-1003-5p MIMAT0020902 Drosophila melanogaster
miR-1003-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggtat 7
|||||||
Sbjct: 1 tgggtat 7
>kshv-miR-K12-9-3p MIMAT0002185 Kaposi sarcoma-associated
miR-K12-9-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggtat 7
|||||||
Sbjct: 2 tgggtat 8
>oha-miR-1c-3p MIMAT0036802 Ophiophagus hannah miR-1c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 3 tgggta 8
>oha-miR-137-5p MIMAT0036708 Ophiophagus hannah miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>chi-miR-660 MIMAT0036284 Capra hircus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>efu-miR-660 MIMAT0035154 Eptesicus fuscus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>eca-miR-8908g MIMAT0034708 Equus caballus miR-8908g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>eca-miR-8908e MIMAT0034702 Equus caballus miR-8908e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>eca-miR-8908k MIMAT0034694 Equus caballus miR-8908k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>cfa-miR-8891 MIMAT0034398 Canis familiaris miR-8891
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>ssa-miR-729-3p MIMAT0032678 Salmo salar miR-729-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 3 tgggta 8
>ssa-miR-137-5p MIMAT0032350 Salmo salar miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>mdo-miR-137b-5p MIMAT0028552 Monodelphis domestica miR-137b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>bma-miR-5882a MIMAT0026385 Brugia malayi miR-5882a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>ccr-miR-729 MIMAT0026316 Cyprinus carpio miR-729
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 3 tgggta 8
>mmu-miR-7066-3p MIMAT0028037 Mus musculus miR-7066-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 8 tgggta 3
>hsa-miR-6861-5p MIMAT0027623 Homo sapiens miR-6861-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 3 tgggta 8
>hbr-miR6167 MIMAT0024785 Hevea brasiliensis miR6167
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>ggo-miR-660 MIMAT0024164 Gorilla gorilla miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>ptr-miR-3132 MIMAT0024058 Pan troglodytes miR-3132
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>cgr-miR-137-5p MIMAT0023762 Cricetulus griseus miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>ame-miR-6000a-5p MIMAT0023539 Apis mellifera miR-6000a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 3 tgggta 8
>ola-miR-729 MIMAT0022662 Oryzias latipes miR-729
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 3 tgggta 8
>tur-miR-317-5p MIMAT0023060 Tetranychus urticae miR-317-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>aca-miR-137b-5p MIMAT0021755 Anolis carolinensis miR-137b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>asu-miR-5354-5p MIMAT0021568 Ascaris suum miR-5354-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>dme-miR-4954-5p MIMAT0020169 Drosophila melanogaster
miR-4954-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggtat 7
||||||
Sbjct: 6 gggtat 1
>pma-miR-137-2-5p MIMAT0019468 Petromyzon marinus miR-137-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>ppy-miR-1912 MIMAT0016240 Pongo pygmaeus miR-1912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>ppy-miR-660 MIMAT0016092 Pongo pygmaeus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>esi-miR3454g-5p MIMAT0017745 Ectocarpus siliculosus miR3454g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>aly-miR774a-3p.1 MIMAT0017596 Arabidopsis lyrata miR774a-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>hsa-miR-3132 MIMAT0014997 Homo sapiens miR-3132
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>hsa-miR-3130-5p MIMAT0014995 Homo sapiens miR-3130-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>hma-miR-3007-3p MIMAT0014675 Hydra magnipapillata miR-3007-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>tgu-miR-137-5p MIMAT0026995 Taeniopygia guttata miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>eca-miR-660 MIMAT0013241 Equus caballus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>eca-miR-1912 MIMAT0013201 Equus caballus miR-1912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>mtr-miR2599 MIMAT0013302 Medicago truncatula miR2599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>dsi-miR-1001-5p MIMAT0012506 Drosophila simulans miR-1001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>aqu-miR-2020-5p MIMAT0009698 Amphimedon queenslandica
miR-2020-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>ptr-miR-660 MIMAT0008308 Pan troglodytes miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>hsa-miR-1912 MIMAT0007887 Homo sapiens miR-1912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>cfa-miR-660 MIMAT0006760 Canis familiaris miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>mml-miR-660-5p MIMAT0006499 Macaca mulatta miR-660-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>mml-miR-137-5p MIMAT0026821 Macaca mulatta miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>oan-miR-137b-5p MIMAT0026753 Ornithorhynchus anatinus
miR-137b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>oan-miR-137a-5p MIMAT0006837 Ornithorhynchus anatinus
miR-137a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>ptr-miR-510 MIMAT0005775 Pan troglodytes miR-510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>mmu-miR-1b-3p MIMAT0017326 Mus musculus miR-1b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>cre-miR1144b MIMAT0005435 Chlamydomonas reinhardtii miR1144b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>dme-miR-1012-5p MIMAT0020906 Drosophila melanogaster
miR-1012-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>dme-miR-1001-5p MIMAT0005521 Drosophila melanogaster
miR-1001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 1 tgggta 6
>bta-miR-660 MIMAT0004344 Bos taurus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>mdo-miR-10b-5p MIMAT0004090 Monodelphis domestica miR-10b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggtat 7
||||||
Sbjct: 6 gggtat 1
>dre-miR-729 MIMAT0003758 Danio rerio miR-729
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggta 6
||||||
Sbjct: 3 tgggta 8
>hsa-miR-660-5p MIMAT0003338 Homo sapiens miR-660-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgggta 6
||||||
Sbjct: 6 tgggta 1
>hsa-miR-503-3p MIMAT0022925 Homo sapiens miR-503-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 2 gggtat 7
>dre-miR-137-5p MIMAT0031972 Danio rerio miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>gga-miR-137-5p MIMAT0026523 Gallus gallus miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>rno-miR-137-5p MIMAT0017126 Rattus norvegicus miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
>mmu-miR-137-5p MIMAT0016986 Mus musculus miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtat 7
||||||
Sbjct: 3 gggtat 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 89
Number of extensions: 80
Number of successful extensions: 69
Number of sequences better than 100.0: 69
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)