BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kun-miR-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ggo-miR-675b MIMAT0024305 Gorilla gorilla miR-675b 14 27
ppy-miR-675a MIMAT0016098 Pongo pygmaeus miR-675a 14 27
rno-miR-675-5p MIMAT0012841 Rattus norvegicus miR-675-5p 14 27
mml-miR-675-5p MIMAT0006507 Macaca mulatta miR-675-5p 14 27
hsa-miR-675-5p MIMAT0004284 Homo sapiens miR-675-5p 14 27
mmu-miR-675-5p MIMAT0003725 Mus musculus miR-675-5p 14 27
rlcv-miR-rL1-5-3p MIMAT0003433 Rhesus lymphocryptovirus miR-rL1-... 14 27
rlcv-miR-rL1-3 MIMAT0003429 Rhesus lymphocryptovirus miR-rL1-3 14 27
ebv-miR-BART3-3p MIMAT0003411 Epstein Barr miR-BART3-3p 14 27
>ggo-miR-675b MIMAT0024305 Gorilla gorilla miR-675b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgcg 7
|||||||
Sbjct: 1 tggtgcg 7
>ppy-miR-675a MIMAT0016098 Pongo pygmaeus miR-675a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgcg 7
|||||||
Sbjct: 1 tggtgcg 7
>rno-miR-675-5p MIMAT0012841 Rattus norvegicus miR-675-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgcg 7
|||||||
Sbjct: 1 tggtgcg 7
>mml-miR-675-5p MIMAT0006507 Macaca mulatta miR-675-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgcg 7
|||||||
Sbjct: 1 tggtgcg 7
>hsa-miR-675-5p MIMAT0004284 Homo sapiens miR-675-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgcg 7
|||||||
Sbjct: 1 tggtgcg 7
>mmu-miR-675-5p MIMAT0003725 Mus musculus miR-675-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgcg 7
|||||||
Sbjct: 1 tggtgcg 7
>rlcv-miR-rL1-5-3p MIMAT0003433 Rhesus lymphocryptovirus
miR-rL1-5-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgcg 7
|||||||
Sbjct: 7 tggtgcg 1
>rlcv-miR-rL1-3 MIMAT0003429 Rhesus lymphocryptovirus miR-rL1-3
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggtgcga 8
|||||||
Sbjct: 7 ggtgcga 1
>ebv-miR-BART3-3p MIMAT0003411 Epstein Barr miR-BART3-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgcg 7
|||||||
Sbjct: 7 tggtgcg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 235
Number of extensions: 226
Number of successful extensions: 201
Number of sequences better than 100.0: 9
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
