BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kshv-miR-k10b_ 1_5
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p              14      20
efu-miR-9312 MIMAT0034986 Eptesicus fuscus miR-9312                    14      20
efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257                    14      20
eca-miR-8948 MIMAT0034477 Equus caballus miR-8948                      14      20
mdo-miR-7324-5p MIMAT0028648 Monodelphis domestica miR-7324-5p         14      20
hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971                  14      20
ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015                  14      20
hsa-miR-3591-3p MIMAT0019877 Homo sapiens miR-3591-3p                  14      20
ame-miR-971 MIMAT0018544 Apis mellifera miR-971                        14      20
rno-miR-3591 MIMAT0017893 Rattus norvegicus miR-3591                   14      20
api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971                   14      20
dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p        14      20
dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p         14      20
mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p                    14      20
kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated miR-K12-10b    14      20
hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p                      14      20
gsa-miR-9399-3p MIMAT0035345 Gyrodactylus salaris miR-9399-3p          12      80
eca-miR-8986b MIMAT0034532 Equus caballus miR-8986b                    12      80
gra-miR8782 MIMAT0034232 Gossypium raimondii miR8782                   12      80
lus-miR398f MIMAT0031861 Linum usitatissimum miR398f                   12      80
ppe-miR3627-3p MIMAT0031535 Prunus persica miR3627-3p                  12      80
hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978                        12      80
prd-miR-7911c-3p MIMAT0030563 Panagrellus redivivus miR-7911c-3p       12      80
gga-miR-7440-3p MIMAT0029035 Gallus gallus miR-7440-3p                 12      80
mmu-miR-6933-3p MIMAT0027767 Mus musculus miR-6933-3p                  12      80
ppe-miR6294 MIMAT0027330 Prunus persica miR6294                        12      80
ggo-miR-609 MIMAT0024301 Gorilla gorilla miR-609                       12      80
osa-miR5530 MIMAT0022165 Oryza sativa miR5530                          12      80
osa-miR5489 MIMAT0022122 Oryza sativa miR5489                          12      80
asu-miR-5355-5p MIMAT0021570 Ascaris suum miR-5355-5p                  12      80
mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228                   12      80
gma-miR1507c-5p MIMAT0021005 Glycine max miR1507c-5p                   12      80
dme-miR-4965-3p MIMAT0020189 Drosophila melanogaster miR-4965-3p       12      80
dme-miR-4949-3p MIMAT0020161 Drosophila melanogaster miR-4949-3p       12      80
tca-miR-279c-5p MIMAT0018730 Tribolium castaneum miR-279c-5p           12      80
tca-miR-3832-3p MIMAT0018695 Tribolium castaneum miR-3832-3p           12      80
mghv-miR-M1-12-3p MIMAT0018171 Mouse gammaherpesvirus miR-M1-12-3p     12      80
vvi-miR2950-3p MIMAT0018010 Vitis vinifera miR2950-3p                  12      80
cin-miR-4187-5p MIMAT0016805 Ciona intestinalis miR-4187-5p            12      80
cin-miR-4076-3p MIMAT0016641 Ciona intestinalis miR-4076-3p            12      80
cin-miR-4063-5p MIMAT0016614 Ciona intestinalis miR-4063-5p            12      80
rno-miR-3576 MIMAT0017862 Rattus norvegicus miR-3576                   12      80
rno-miR-1188-5p MIMAT0017854 Rattus norvegicus miR-1188-5p             12      80
cqu-miR-2941-1-5p MIMAT0014434 Culex quinquefasciatus miR-2941-1-5p    12      80
ghr-miR2950 MIMAT0014348 Gossypium hirsutum miR2950                    12      80
dps-miR-2548-3p MIMAT0012357 Drosophila pseudoobscura miR-2548-3p      12      80
ptr-miR-609 MIMAT0008272 Pan troglodytes miR-609                       12      80
mml-miR-609 MIMAT0006462 Macaca mulatta miR-609                        12      80
mdo-miR-1541 MIMAT0006140 Monodelphis domestica miR-1541               12      80
gga-miR-1467-3p MIMAT0007346 Gallus gallus miR-1467-3p                 12      80
osa-miR810b.1 MIMAT0005977 Oryza sativa miR810b.1                      12      80
mmu-miR-1188-5p MIMAT0005843 Mus musculus miR-1188-5p                  12      80
ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2                12      80
hsa-miR-609 MIMAT0003277 Homo sapiens miR-609                          12      80
>dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>efu-miR-9312 MIMAT0034986 Eptesicus fuscus miR-9312
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 7 tggtgtt 1
>efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>eca-miR-8948 MIMAT0034477 Equus caballus miR-8948
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 1 tggtgtt 7
>mdo-miR-7324-5p MIMAT0028648 Monodelphis domestica miR-7324-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 8 tggtgtt 2
>hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>hsa-miR-3591-3p MIMAT0019877 Homo sapiens miR-3591-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 8 tggtgtt 2
>ame-miR-971 MIMAT0018544 Apis mellifera miR-971
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>rno-miR-3591 MIMAT0017893 Rattus norvegicus miR-3591
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 7 tggtgtt 1
>api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 8 tggtgtt 2
>kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated
         miR-K12-10b
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 1 tggtgtt 7
>hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 8 tggtgtt 2
>gsa-miR-9399-3p MIMAT0035345 Gyrodactylus salaris miR-9399-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>eca-miR-8986b MIMAT0034532 Equus caballus miR-8986b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>gra-miR8782 MIMAT0034232 Gossypium raimondii miR8782
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>lus-miR398f MIMAT0031861 Linum usitatissimum miR398f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 1 ggtgtt 6
>ppe-miR3627-3p MIMAT0031535 Prunus persica miR3627-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>prd-miR-7911c-3p MIMAT0030563 Panagrellus redivivus
         miR-7911c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>gga-miR-7440-3p MIMAT0029035 Gallus gallus miR-7440-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>mmu-miR-6933-3p MIMAT0027767 Mus musculus miR-6933-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 2 ggtgtt 7
>ppe-miR6294 MIMAT0027330 Prunus persica miR6294
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>ggo-miR-609 MIMAT0024301 Gorilla gorilla miR-609
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 3 ggtgtt 8
>osa-miR5530 MIMAT0022165 Oryza sativa miR5530
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>osa-miR5489 MIMAT0022122 Oryza sativa miR5489
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 3 ggtgtt 8
>asu-miR-5355-5p MIMAT0021570 Ascaris suum miR-5355-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 8 ggtgtt 3
>mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>gma-miR1507c-5p MIMAT0021005 Glycine max miR1507c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 3 ggtgtt 8
>dme-miR-4965-3p MIMAT0020189 Drosophila melanogaster
         miR-4965-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 8 tggtgt 3
>dme-miR-4949-3p MIMAT0020161 Drosophila melanogaster
         miR-4949-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>tca-miR-279c-5p MIMAT0018730 Tribolium castaneum miR-279c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 3 ggtgtt 8
>tca-miR-3832-3p MIMAT0018695 Tribolium castaneum miR-3832-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 6 tggtgt 1
>mghv-miR-M1-12-3p MIMAT0018171 Mouse gammaherpesvirus
         miR-M1-12-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>vvi-miR2950-3p MIMAT0018010 Vitis vinifera miR2950-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>cin-miR-4187-5p MIMAT0016805 Ciona intestinalis miR-4187-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>cin-miR-4076-3p MIMAT0016641 Ciona intestinalis miR-4076-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 1 ggtgtt 6
>cin-miR-4063-5p MIMAT0016614 Ciona intestinalis miR-4063-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 6 ggtgtt 1
>rno-miR-3576 MIMAT0017862 Rattus norvegicus miR-3576
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 8 tggtgt 3
>rno-miR-1188-5p MIMAT0017854 Rattus norvegicus miR-1188-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>cqu-miR-2941-1-5p MIMAT0014434 Culex quinquefasciatus
         miR-2941-1-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>ghr-miR2950 MIMAT0014348 Gossypium hirsutum miR2950
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>dps-miR-2548-3p MIMAT0012357 Drosophila pseudoobscura
         miR-2548-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>ptr-miR-609 MIMAT0008272 Pan troglodytes miR-609
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 3 ggtgtt 8
>mml-miR-609 MIMAT0006462 Macaca mulatta miR-609
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 3 ggtgtt 8
>mdo-miR-1541 MIMAT0006140 Monodelphis domestica miR-1541
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>gga-miR-1467-3p MIMAT0007346 Gallus gallus miR-1467-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 8 tggtgt 3
>osa-miR810b.1 MIMAT0005977 Oryza sativa miR810b.1
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 8 ggtgtt 3
>mmu-miR-1188-5p MIMAT0005843 Mus musculus miR-1188-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 1 tggtgt 6
>ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>hsa-miR-609 MIMAT0003277 Homo sapiens miR-609
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 3 ggtgtt 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 74
Number of extensions: 58
Number of successful extensions: 54
Number of sequences better than 100.0: 54
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 54
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)