BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-10b
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-8948 MIMAT0034477 Equus caballus miR-8948 16 6.9
mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p 16 6.9
kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated miR-K12-10b 16 6.9
hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p 16 6.9
dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p 14 27
efu-miR-9312 MIMAT0034986 Eptesicus fuscus miR-9312 14 27
efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257 14 27
mdo-miR-7324-5p MIMAT0028648 Monodelphis domestica miR-7324-5p 14 27
hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971 14 27
ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015 14 27
hsa-miR-3591-3p MIMAT0019877 Homo sapiens miR-3591-3p 14 27
ame-miR-971 MIMAT0018544 Apis mellifera miR-971 14 27
rno-miR-3591 MIMAT0017893 Rattus norvegicus miR-3591 14 27
api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971 14 27
dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p 14 27
dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p 14 27
>eca-miR-8948 MIMAT0034477 Equus caballus miR-8948
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggtgttg 8
||||||||
Sbjct: 1 tggtgttg 8
>mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tggtgttg 8
||||||||
Sbjct: 8 tggtgttg 1
>kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated
miR-K12-10b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggtgttg 8
||||||||
Sbjct: 1 tggtgttg 8
>hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tggtgttg 8
||||||||
Sbjct: 8 tggtgttg 1
>dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgtt 7
|||||||
Sbjct: 2 tggtgtt 8
>efu-miR-9312 MIMAT0034986 Eptesicus fuscus miR-9312
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgtt 7
|||||||
Sbjct: 7 tggtgtt 1
>efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgtt 7
|||||||
Sbjct: 2 tggtgtt 8
>mdo-miR-7324-5p MIMAT0028648 Monodelphis domestica miR-7324-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgtt 7
|||||||
Sbjct: 8 tggtgtt 2
>hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgtt 7
|||||||
Sbjct: 2 tggtgtt 8
>ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgtt 7
|||||||
Sbjct: 2 tggtgtt 8
>hsa-miR-3591-3p MIMAT0019877 Homo sapiens miR-3591-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgtt 7
|||||||
Sbjct: 8 tggtgtt 2
>ame-miR-971 MIMAT0018544 Apis mellifera miR-971
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgtt 7
|||||||
Sbjct: 2 tggtgtt 8
>rno-miR-3591 MIMAT0017893 Rattus norvegicus miR-3591
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgtt 7
|||||||
Sbjct: 7 tggtgtt 1
>api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgtt 7
|||||||
Sbjct: 2 tggtgtt 8
>dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgtt 7
|||||||
Sbjct: 2 tggtgtt 8
>dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtgtt 7
|||||||
Sbjct: 2 tggtgtt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 127
Number of extensions: 107
Number of successful extensions: 83
Number of sequences better than 100.0: 16
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
