BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d21-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-6715-3p MIMAT0029877 Mus musculus miR-6715-3p 16 6.9
dev-miR-D21-5p MIMAT0028196 Duck enteritis miR-D21-5p 16 6.9
hsa-miR-6715a-3p MIMAT0025841 Homo sapiens miR-6715a-3p 16 6.9
rno-miR-497-3p MIMAT0017230 Rattus norvegicus miR-497-3p 16 6.9
chi-miR-497-3p MIMAT0036260 Capra hircus miR-497-3p 14 27
pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497 14 27
prd-miR-7880c-5p MIMAT0030590 Panagrellus redivivus miR-7880c-5p 14 27
mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p 14 27
cgr-miR-497-3p MIMAT0023971 Cricetulus griseus miR-497-3p 14 27
pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596 14 27
pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p 14 27
tca-miR-3883-3p MIMAT0018863 Tribolium castaneum miR-3883-3p 14 27
mdo-miR-497-3p MIMAT0026946 Monodelphis domestica miR-497-3p 14 27
bta-miR-1603 MIMAT0011823 Bos taurus miR-1603 14 27
bta-miR-584 MIMAT0009352 Bos taurus miR-584 14 27
mml-miR-497-3p MIMAT0026887 Macaca mulatta miR-497-3p 14 27
cin-miR-92b-5p MIMAT0015254 Ciona intestinalis miR-92b-5p 14 27
mmu-miR-497a-3p MIMAT0017247 Mus musculus miR-497a-3p 14 27
hsa-miR-497-3p MIMAT0004768 Homo sapiens miR-497-3p 14 27
>mmu-miR-6715-3p MIMAT0029877 Mus musculus miR-6715-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tggtttgg 8
||||||||
Sbjct: 8 tggtttgg 1
>dev-miR-D21-5p MIMAT0028196 Duck enteritis miR-D21-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggtttgg 8
||||||||
Sbjct: 1 tggtttgg 8
>hsa-miR-6715a-3p MIMAT0025841 Homo sapiens miR-6715a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tggtttgg 8
||||||||
Sbjct: 8 tggtttgg 1
>rno-miR-497-3p MIMAT0017230 Rattus norvegicus miR-497-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tggtttgg 8
||||||||
Sbjct: 8 tggtttgg 1
>chi-miR-497-3p MIMAT0036260 Capra hircus miR-497-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggtttgg 8
|||||||
Sbjct: 8 ggtttgg 2
>pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtttgg 8
|||||||
Sbjct: 2 ggtttgg 8
>prd-miR-7880c-5p MIMAT0030590 Panagrellus redivivus
miR-7880c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtttgg 8
|||||||
Sbjct: 2 ggtttgg 8
>mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtttg 7
|||||||
Sbjct: 7 tggtttg 1
>cgr-miR-497-3p MIMAT0023971 Cricetulus griseus miR-497-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtttg 7
|||||||
Sbjct: 7 tggtttg 1
>pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtttgg 8
|||||||
Sbjct: 2 ggtttgg 8
>pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtttg 7
|||||||
Sbjct: 2 tggtttg 8
>tca-miR-3883-3p MIMAT0018863 Tribolium castaneum miR-3883-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggtttgg 8
|||||||
Sbjct: 8 ggtttgg 2
>mdo-miR-497-3p MIMAT0026946 Monodelphis domestica miR-497-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtttg 7
|||||||
Sbjct: 7 tggtttg 1
>bta-miR-1603 MIMAT0011823 Bos taurus miR-1603
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtttg 7
|||||||
Sbjct: 2 tggtttg 8
>bta-miR-584 MIMAT0009352 Bos taurus miR-584
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggtttg 7
|||||||
Sbjct: 1 tggtttg 7
>mml-miR-497-3p MIMAT0026887 Macaca mulatta miR-497-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtttg 7
|||||||
Sbjct: 7 tggtttg 1
>cin-miR-92b-5p MIMAT0015254 Ciona intestinalis miR-92b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtttgg 8
|||||||
Sbjct: 2 ggtttgg 8
>mmu-miR-497a-3p MIMAT0017247 Mus musculus miR-497a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtttg 7
|||||||
Sbjct: 7 tggtttg 1
>hsa-miR-497-3p MIMAT0004768 Homo sapiens miR-497-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtttg 7
|||||||
Sbjct: 7 tggtttg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 186
Number of extensions: 163
Number of successful extensions: 128
Number of sequences better than 100.0: 19
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
