BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart13
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-35-3p MIMAT0016963 Rhesus lymphocryptovirus miR-rL1... 16 6.9
ebv-miR-BART13-3p MIMAT0003424 Epstein Barr miR-BART13-3p 16 6.9
ppy-miR-600 MIMAT0016042 Pongo pygmaeus miR-600 14 27
cte-miR-216c MIMAT0013570 Capitella teleta miR-216c 14 27
dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p 14 27
mml-miR-600 MIMAT0006457 Macaca mulatta miR-600 14 27
gga-miR-1559-3p MIMAT0026775 Gallus gallus miR-1559-3p 14 27
dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p 14 27
>rlcv-miR-rL1-35-3p MIMAT0016963 Rhesus lymphocryptovirus
miR-rL1-35-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgtaactt 8
||||||||
Sbjct: 1 tgtaactt 8
>ebv-miR-BART13-3p MIMAT0003424 Epstein Barr miR-BART13-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgtaactt 8
||||||||
Sbjct: 1 tgtaactt 8
>ppy-miR-600 MIMAT0016042 Pongo pygmaeus miR-600
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtaact 7
|||||||
Sbjct: 7 tgtaact 1
>cte-miR-216c MIMAT0013570 Capitella teleta miR-216c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtaactt 8
|||||||
Sbjct: 8 gtaactt 2
>dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtaactt 8
|||||||
Sbjct: 1 gtaactt 7
>mml-miR-600 MIMAT0006457 Macaca mulatta miR-600
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtaact 7
|||||||
Sbjct: 7 tgtaact 1
>gga-miR-1559-3p MIMAT0026775 Gallus gallus miR-1559-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtaact 7
|||||||
Sbjct: 7 tgtaact 1
>dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtaactt 8
|||||||
Sbjct: 1 gtaactt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 165
Number of extensions: 155
Number of successful extensions: 118
Number of sequences better than 100.0: 8
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
