BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart17-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-miR-675-3p MIMAT0017363 Rattus norvegicus miR-675-3p 16 6.9
ebv-miR-BART17-3p MIMAT0003716 Epstein Barr miR-BART17-3p 16 6.9
hsa-miR-5689 MIMAT0022481 Homo sapiens miR-5689 14 27
aau-miR160 MIMAT0022672 Acacia auriculiformis miR160 14 27
ppy-miR-675b MIMAT0016099 Pongo pygmaeus miR-675b 14 27
bmo-miR-3329 MIMAT0015517 Bombyx mori miR-3329 14 27
osa-miR2932 MIMAT0014063 Oryza sativa miR2932 14 27
dps-miR-2556-5p MIMAT0012374 Drosophila pseudoobscura miR-2556-5p 14 27
mml-miR-675-3p MIMAT0026908 Macaca mulatta miR-675-3p 14 27
hsa-miR-675-3p MIMAT0006790 Homo sapiens miR-675-3p 14 27
mmu-miR-675-3p MIMAT0003726 Mus musculus miR-675-3p 14 27
>rno-miR-675-3p MIMAT0017363 Rattus norvegicus miR-675-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgtatgcc 8
||||||||
Sbjct: 1 tgtatgcc 8
>ebv-miR-BART17-3p MIMAT0003716 Epstein Barr miR-BART17-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgtatgcc 8
||||||||
Sbjct: 1 tgtatgcc 8
>hsa-miR-5689 MIMAT0022481 Homo sapiens miR-5689
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtatgc 7
|||||||
Sbjct: 8 tgtatgc 2
>aau-miR160 MIMAT0022672 Acacia auriculiformis miR160
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtatgcc 8
|||||||
Sbjct: 8 gtatgcc 2
>ppy-miR-675b MIMAT0016099 Pongo pygmaeus miR-675b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtatgc 7
|||||||
Sbjct: 2 tgtatgc 8
>bmo-miR-3329 MIMAT0015517 Bombyx mori miR-3329
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtatgc 7
|||||||
Sbjct: 7 tgtatgc 1
>osa-miR2932 MIMAT0014063 Oryza sativa miR2932
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtatgcc 8
|||||||
Sbjct: 2 gtatgcc 8
>dps-miR-2556-5p MIMAT0012374 Drosophila pseudoobscura
miR-2556-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtatgcc 8
|||||||
Sbjct: 1 gtatgcc 7
>mml-miR-675-3p MIMAT0026908 Macaca mulatta miR-675-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtatgc 7
|||||||
Sbjct: 2 tgtatgc 8
>hsa-miR-675-3p MIMAT0006790 Homo sapiens miR-675-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtatgc 7
|||||||
Sbjct: 2 tgtatgc 8
>mmu-miR-675-3p MIMAT0003726 Mus musculus miR-675-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtatgc 7
|||||||
Sbjct: 2 tgtatgc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 94
Number of extensions: 81
Number of successful extensions: 66
Number of sequences better than 100.0: 11
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)