BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d5-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dev-miR-D5-5p MIMAT0028174 Duck enteritis miR-D5-5p                    16   6.9  
osa-miR1877 MIMAT0007834 Oryza sativa miR1877                          16   6.9  
cfa-miR-8790 MIMAT0034280 Canis familiaris miR-8790                    14      27
ppc-miR-8362-3p MIMAT0033291 Pristionchus pacificus miR-8362-3p        14      27
ptc-miR7828 MIMAT0030388 Populus trichocarpa miR7828                   14      27
cbn-miR-64j MIMAT0029698 Caenorhabditis brenneri miR-64j               14      27
osa-miR5792 MIMAT0023259 Oryza sativa miR5792                          14      27
osa-miR5534b MIMAT0022170 Oryza sativa miR5534b                        14      27
dsi-miR-959 MIMAT0012508 Drosophila simulans miR-959                   14      27
dps-miR-959-3p MIMAT0012258 Drosophila pseudoobscura miR-959-3p        14      27
oan-miR-1419d-3p MIMAT0007254 Ornithorhynchus anatinus miR-1419d-3p    14      27
dme-miR-959-3p MIMAT0005473 Drosophila melanogaster miR-959-3p         14      27
>dev-miR-D5-5p MIMAT0028174 Duck enteritis miR-D5-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tgtcatct 8
         ||||||||
Sbjct: 1 tgtcatct 8
>osa-miR1877 MIMAT0007834 Oryza sativa miR1877
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 tgtcatct 8
         ||||||||
Sbjct: 8 tgtcatct 1
>cfa-miR-8790 MIMAT0034280 Canis familiaris miR-8790
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 1 tgtcatc 7
>ppc-miR-8362-3p MIMAT0033291 Pristionchus pacificus miR-8362-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 8 tgtcatc 2
>ptc-miR7828 MIMAT0030388 Populus trichocarpa miR7828
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 7 tgtcatc 1
>cbn-miR-64j MIMAT0029698 Caenorhabditis brenneri miR-64j
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 7 tgtcatc 1
>osa-miR5792 MIMAT0023259 Oryza sativa miR5792
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 7 tgtcatc 1
>osa-miR5534b MIMAT0022170 Oryza sativa miR5534b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 8 tgtcatc 2
>dsi-miR-959 MIMAT0012508 Drosophila simulans miR-959
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 2 tgtcatc 8
>dps-miR-959-3p MIMAT0012258 Drosophila pseudoobscura miR-959-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 2 tgtcatc 8
>oan-miR-1419d-3p MIMAT0007254 Ornithorhynchus anatinus
         miR-1419d-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 2 tgtcatc 8
>dme-miR-959-3p MIMAT0005473 Drosophila melanogaster miR-959-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtcatc 7
         |||||||
Sbjct: 2 tgtcatc 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 290
Number of extensions: 276
Number of successful extensions: 186
Number of sequences better than 100.0: 12
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)