BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-7-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-miR-347 MIMAT0000598 Rattus norvegicus miR-347 16 6.9
dvi-miR-980-5p MIMAT0035595 Drosophila virilis miR-980-5p 14 27
eca-miR-7667 MIMAT0034585 Equus caballus miR-7667 14 27
gra-miR8698 MIMAT0034079 Gossypium raimondii miR8698 14 27
ppc-miR-8326-5p MIMAT0033196 Pristionchus pacificus miR-8326-5p 14 27
hsa-miR-7845-5p MIMAT0030420 Homo sapiens miR-7845-5p 14 27
oan-miR-365-2-5p MIMAT0031067 Ornithorhynchus anatinus miR-365-2-5p 14 27
mmu-miR-7042-3p MIMAT0027989 Mus musculus miR-7042-3p 14 27
hsa-miR-6875-5p MIMAT0027650 Homo sapiens miR-6875-5p 14 27
ptc-miR6462c-5p MIMAT0025205 Populus trichocarpa miR6462c-5p 14 27
ggo-miR-3126 MIMAT0024261 Gorilla gorilla miR-3126 14 27
ame-miR-6056 MIMAT0023680 Apis mellifera miR-6056 14 27
hco-miR-5952 MIMAT0023454 Haemonchus contortus miR-5952 14 27
mtr-miR5284g MIMAT0021341 Medicago truncatula miR5284g 14 27
mtr-miR5284f MIMAT0021340 Medicago truncatula miR5284f 14 27
mtr-miR5284e MIMAT0021339 Medicago truncatula miR5284e 14 27
mtr-miR5284d MIMAT0021338 Medicago truncatula miR5284d 14 27
mtr-miR5284c MIMAT0021337 Medicago truncatula miR5284c 14 27
mtr-miR5284a MIMAT0021335 Medicago truncatula miR5284a 14 27
bfl-miR-4893 MIMAT0020483 Branchiostoma floridae miR-4893 14 27
hsa-miR-3126-5p MIMAT0014989 Homo sapiens miR-3126-5p 14 27
tgu-miR-365-2-5p MIMAT0031088 Taeniopygia guttata miR-365-2-5p 14 27
ssc-miR-365-5p MIMAT0017376 Sus scrofa miR-365-5p 14 27
ptr-miR-642 MIMAT0008296 Pan troglodytes miR-642 14 27
mml-miR-642 MIMAT0006483 Macaca mulatta miR-642 14 27
mml-miR-365-2-5p MIMAT0031081 Macaca mulatta miR-365-2-5p 14 27
mml-miR-365-1-5p MIMAT0026856 Macaca mulatta miR-365-1-5p 14 27
gga-miR-1590 MIMAT0007452 Gallus gallus miR-1590 14 27
oan-miR-1413-5p MIMAT0026761 Ornithorhynchus anatinus miR-1413-5p 14 27
oan-miR-204-3p MIMAT0006842 Ornithorhynchus anatinus miR-204-3p 14 27
cre-miR1150.1 MIMAT0005392 Chlamydomonas reinhardtii miR1150.1 14 27
smo-miR1114 MIMAT0005272 Selaginella moellendorffii miR1114 14 27
mdo-miR-365-5p MIMAT0026683 Monodelphis domestica miR-365-5p 14 27
gga-miR-365-2-5p MIMAT0031075 Gallus gallus miR-365-2-5p 14 27
gga-miR-365-1-5p MIMAT0026630 Gallus gallus miR-365-1-5p 14 27
hsa-miR-642a-5p MIMAT0003312 Homo sapiens miR-642a-5p 14 27
rno-miR-365-5p MIMAT0017184 Rattus norvegicus miR-365-5p 14 27
>rno-miR-347 MIMAT0000598 Rattus norvegicus miR-347
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgtccctc 8
||||||||
Sbjct: 1 tgtccctc 8
>dvi-miR-980-5p MIMAT0035595 Drosophila virilis miR-980-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtccctc 8
|||||||
Sbjct: 2 gtccctc 8
>eca-miR-7667 MIMAT0034585 Equus caballus miR-7667
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtccct 7
|||||||
Sbjct: 8 tgtccct 2
>gra-miR8698 MIMAT0034079 Gossypium raimondii miR8698
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtccct 7
|||||||
Sbjct: 7 tgtccct 1
>ppc-miR-8326-5p MIMAT0033196 Pristionchus pacificus miR-8326-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtccct 7
|||||||
Sbjct: 7 tgtccct 1
>hsa-miR-7845-5p MIMAT0030420 Homo sapiens miR-7845-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtccct 7
|||||||
Sbjct: 8 tgtccct 2
>oan-miR-365-2-5p MIMAT0031067 Ornithorhynchus anatinus
miR-365-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>mmu-miR-7042-3p MIMAT0027989 Mus musculus miR-7042-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtccct 7
|||||||
Sbjct: 1 tgtccct 7
>hsa-miR-6875-5p MIMAT0027650 Homo sapiens miR-6875-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 8 gtccctc 2
>ptc-miR6462c-5p MIMAT0025205 Populus trichocarpa miR6462c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtccct 7
|||||||
Sbjct: 8 tgtccct 2
>ggo-miR-3126 MIMAT0024261 Gorilla gorilla miR-3126
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 8 gtccctc 2
>ame-miR-6056 MIMAT0023680 Apis mellifera miR-6056
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>hco-miR-5952 MIMAT0023454 Haemonchus contortus miR-5952
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 8 gtccctc 2
>mtr-miR5284g MIMAT0021341 Medicago truncatula miR5284g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>mtr-miR5284f MIMAT0021340 Medicago truncatula miR5284f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>mtr-miR5284e MIMAT0021339 Medicago truncatula miR5284e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>mtr-miR5284d MIMAT0021338 Medicago truncatula miR5284d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>mtr-miR5284c MIMAT0021337 Medicago truncatula miR5284c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>mtr-miR5284a MIMAT0021335 Medicago truncatula miR5284a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>bfl-miR-4893 MIMAT0020483 Branchiostoma floridae miR-4893
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtccct 7
|||||||
Sbjct: 1 tgtccct 7
>hsa-miR-3126-5p MIMAT0014989 Homo sapiens miR-3126-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 8 gtccctc 2
>tgu-miR-365-2-5p MIMAT0031088 Taeniopygia guttata miR-365-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>ssc-miR-365-5p MIMAT0017376 Sus scrofa miR-365-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>ptr-miR-642 MIMAT0008296 Pan troglodytes miR-642
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtccctc 8
|||||||
Sbjct: 1 gtccctc 7
>mml-miR-642 MIMAT0006483 Macaca mulatta miR-642
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtccctc 8
|||||||
Sbjct: 1 gtccctc 7
>mml-miR-365-2-5p MIMAT0031081 Macaca mulatta miR-365-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>mml-miR-365-1-5p MIMAT0026856 Macaca mulatta miR-365-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>gga-miR-1590 MIMAT0007452 Gallus gallus miR-1590
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtccct 7
|||||||
Sbjct: 7 tgtccct 1
>oan-miR-1413-5p MIMAT0026761 Ornithorhynchus anatinus
miR-1413-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>oan-miR-204-3p MIMAT0006842 Ornithorhynchus anatinus miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtccct 7
|||||||
Sbjct: 8 tgtccct 2
>cre-miR1150.1 MIMAT0005392 Chlamydomonas reinhardtii miR1150.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 8 gtccctc 2
>smo-miR1114 MIMAT0005272 Selaginella moellendorffii miR1114
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgtccct 7
|||||||
Sbjct: 8 tgtccct 2
>mdo-miR-365-5p MIMAT0026683 Monodelphis domestica miR-365-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>gga-miR-365-2-5p MIMAT0031075 Gallus gallus miR-365-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>gga-miR-365-1-5p MIMAT0026630 Gallus gallus miR-365-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
>hsa-miR-642a-5p MIMAT0003312 Homo sapiens miR-642a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtccctc 8
|||||||
Sbjct: 1 gtccctc 7
>rno-miR-365-5p MIMAT0017184 Rattus norvegicus miR-365-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtccctc 8
|||||||
Sbjct: 7 gtccctc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 234
Number of extensions: 196
Number of successful extensions: 168
Number of sequences better than 100.0: 37
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 37
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
