BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-20-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-20-3p MIMAT0014066 Rhesus lymphocryptovirus miR-rL1... 16 6.9
efu-miR-9322 MIMAT0035049 Eptesicus fuscus miR-9322 14 27
mdo-miR-7336-5p MIMAT0028680 Monodelphis domestica miR-7336-5p 14 27
hvu-miR6188 MIMAT0024812 Hordeum vulgare miR6188 14 27
hbr-miR6171 MIMAT0024790 Hevea brasiliensis miR6171 14 27
aca-miR-5458 MIMAT0022085 Anolis carolinensis miR-5458 14 27
aca-miR-5447 MIMAT0022069 Anolis carolinensis miR-5447 14 27
aca-miR-363-5p MIMAT0021945 Anolis carolinensis miR-363-5p 14 27
hsa-miR-4752 MIMAT0019889 Homo sapiens miR-4752 14 27
tgu-miR-363-5p MIMAT0026972 Taeniopygia guttata miR-363-5p 14 27
cre-miR1169-3p MIMAT0005427 Chlamydomonas reinhardtii miR1169-3p 14 27
pta-miR946a-5p MIMAT0006791 Pinus taeda miR946a-5p 14 27
>rlcv-miR-rL1-20-3p MIMAT0014066 Rhesus lymphocryptovirus
miR-rL1-20-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgtggatc 8
||||||||
Sbjct: 1 tgtggatc 8
>efu-miR-9322 MIMAT0035049 Eptesicus fuscus miR-9322
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtggat 7
|||||||
Sbjct: 1 tgtggat 7
>mdo-miR-7336-5p MIMAT0028680 Monodelphis domestica miR-7336-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtggat 7
|||||||
Sbjct: 1 tgtggat 7
>hvu-miR6188 MIMAT0024812 Hordeum vulgare miR6188
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatc 8
|||||||
Sbjct: 2 gtggatc 8
>hbr-miR6171 MIMAT0024790 Hevea brasiliensis miR6171
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtggat 7
|||||||
Sbjct: 2 tgtggat 8
>aca-miR-5458 MIMAT0022085 Anolis carolinensis miR-5458
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtggatc 8
|||||||
Sbjct: 8 gtggatc 2
>aca-miR-5447 MIMAT0022069 Anolis carolinensis miR-5447
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtggat 7
|||||||
Sbjct: 2 tgtggat 8
>aca-miR-363-5p MIMAT0021945 Anolis carolinensis miR-363-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatc 8
|||||||
Sbjct: 1 gtggatc 7
>hsa-miR-4752 MIMAT0019889 Homo sapiens miR-4752
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtggat 7
|||||||
Sbjct: 2 tgtggat 8
>tgu-miR-363-5p MIMAT0026972 Taeniopygia guttata miR-363-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatc 8
|||||||
Sbjct: 1 gtggatc 7
>cre-miR1169-3p MIMAT0005427 Chlamydomonas reinhardtii
miR1169-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtggat 7
|||||||
Sbjct: 1 tgtggat 7
>pta-miR946a-5p MIMAT0006791 Pinus taeda miR946a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgtggat 7
|||||||
Sbjct: 1 tgtggat 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 257
Number of extensions: 244
Number of successful extensions: 119
Number of sequences better than 100.0: 12
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
