BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv1-miR-m5-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

rno-miR-6216 MIMAT0024856 Rattus norvegicus miR-6216                   16   6.9  
mdv1-miR-M5-3p MIMAT0003926 Mareks disease miR-M5-3p                   16   6.9  
chi-miR-223-5p MIMAT0036071 Capra hircus miR-223-5p                    14      27
gra-miR8737 MIMAT0034149 Gossypium raimondii miR8737                   14      27
ath-miR8174 MIMAT0032773 Arabidopsis thaliana miR8174                  14      27
tca-miR-3853-5p MIMAT0018762 Tribolium castaneum miR-3853-5p           14      27
cin-miR-4047-3p MIMAT0016584 Ciona intestinalis miR-4047-3p            14      27
hsa-miR-466 MIMAT0015002 Homo sapiens miR-466                          14      27
dps-miR-2552-3p MIMAT0012365 Drosophila pseudoobscura miR-2552-3p      14      27
mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199                   14      27
mmu-miR-466i-3p MIMAT0005834 Mus musculus miR-466i-3p                  14      27
mmu-miR-466f-3p MIMAT0004882 Mus musculus miR-466f-3p                  14      27
dme-miR-318-5p MIMAT0020844 Drosophila melanogaster miR-318-5p         14      27
>rno-miR-6216 MIMAT0024856 Rattus norvegicus miR-6216
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 tgtgtatc 8
         ||||||||
Sbjct: 8 tgtgtatc 1
>mdv1-miR-M5-3p MIMAT0003926 Mareks disease miR-M5-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tgtgtatc 8
         ||||||||
Sbjct: 1 tgtgtatc 8
>chi-miR-223-5p MIMAT0036071 Capra hircus miR-223-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtgtat 7
         |||||||
Sbjct: 1 tgtgtat 7
>gra-miR8737 MIMAT0034149 Gossypium raimondii miR8737
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gtgtatc 8
         |||||||
Sbjct: 1 gtgtatc 7
>ath-miR8174 MIMAT0032773 Arabidopsis thaliana miR8174
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtgtat 7
         |||||||
Sbjct: 2 tgtgtat 8
>tca-miR-3853-5p MIMAT0018762 Tribolium castaneum miR-3853-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtgtat 7
         |||||||
Sbjct: 2 tgtgtat 8
>cin-miR-4047-3p MIMAT0016584 Ciona intestinalis miR-4047-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtgtat 7
         |||||||
Sbjct: 2 tgtgtat 8
>hsa-miR-466 MIMAT0015002 Homo sapiens miR-466
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgtgtat 7
         |||||||
Sbjct: 7 tgtgtat 1
>dps-miR-2552-3p MIMAT0012365 Drosophila pseudoobscura
         miR-2552-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgtgtat 7
         |||||||
Sbjct: 2 tgtgtat 8
>mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gtgtatc 8
         |||||||
Sbjct: 8 gtgtatc 2
>mmu-miR-466i-3p MIMAT0005834 Mus musculus miR-466i-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgtgtat 7
         |||||||
Sbjct: 7 tgtgtat 1
>mmu-miR-466f-3p MIMAT0004882 Mus musculus miR-466f-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgtgtat 7
         |||||||
Sbjct: 8 tgtgtat 2
>dme-miR-318-5p MIMAT0020844 Drosophila melanogaster miR-318-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gtgtatc 8
         |||||||
Sbjct: 8 gtgtatc 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 87
Number of successful extensions: 69
Number of sequences better than 100.0: 13
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)