BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m7-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv1-miR-M7-5p MIMAT0005804 Mareks disease miR-M7-5p 16 6.9
bdi-miR7757-3p.2 MIMAT0030260 Brachypodium distachyon miR7757-3p.2 14 27
mml-miR-7204-3p MIMAT0028373 Macaca mulatta miR-7204-3p 14 27
dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p 14 27
>mdv1-miR-M7-5p MIMAT0005804 Mareks disease miR-M7-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgttatct 8
||||||||
Sbjct: 1 tgttatct 8
>bdi-miR7757-3p.2 MIMAT0030260 Brachypodium distachyon
miR7757-3p.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttatct 8
|||||||
Sbjct: 7 gttatct 1
>mml-miR-7204-3p MIMAT0028373 Macaca mulatta miR-7204-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgttatc 7
|||||||
Sbjct: 8 tgttatc 2
>dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttatct 8
|||||||
Sbjct: 8 gttatct 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 67
Number of extensions: 62
Number of successful extensions: 55
Number of sequences better than 100.0: 4
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 4
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)