BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m18-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9084 MIMAT0034629 Equus caballus miR-9084 16 6.9
mmu-miR-7214-5p MIMAT0028396 Mus musculus miR-7214-5p 16 6.9
pma-miR-4547-5p MIMAT0019578 Petromyzon marinus miR-4547-5p 16 6.9
tca-miR-3825-5p MIMAT0018678 Tribolium castaneum miR-3825-5p 16 6.9
mdv2-miR-M18-5p MIMAT0004458 Mareks disease miR-M18-5p 16 6.9
osa-miR5539b MIMAT0031377 Oryza sativa miR5539b 14 27
prd-miR-7920-5p MIMAT0030682 Panagrellus redivivus miR-7920-5p 14 27
bdi-miR7735-5p MIMAT0030206 Brachypodium distachyon miR7735-5p 14 27
bdi-miR7729b-5p MIMAT0030192 Brachypodium distachyon miR7729b-5p 14 27
bdi-miR7729a-5p MIMAT0030190 Brachypodium distachyon miR7729a-5p 14 27
mmu-miR-7234-5p MIMAT0028436 Mus musculus miR-7234-5p 14 27
mtr-miR2592bn-3p MIMAT0022218 Medicago truncatula miR2592bn-3p 14 27
mtr-miR2592bm-3p MIMAT0022214 Medicago truncatula miR2592bm-3p 14 27
osa-miR5539a MIMAT0022175 Oryza sativa miR5539a 14 27
ame-miR-3729 MIMAT0018596 Apis mellifera miR-3729 14 27
osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p 14 27
oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus miR-1422k-3p 14 27
oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus miR-1422c-3p 14 27
hsa-miR-570-3p MIMAT0003235 Homo sapiens miR-570-3p 14 27
>eca-miR-9084 MIMAT0034629 Equus caballus miR-9084
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgttttct 8
||||||||
Sbjct: 1 tgttttct 8
>mmu-miR-7214-5p MIMAT0028396 Mus musculus miR-7214-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgttttct 8
||||||||
Sbjct: 1 tgttttct 8
>pma-miR-4547-5p MIMAT0019578 Petromyzon marinus miR-4547-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgttttct 8
||||||||
Sbjct: 1 tgttttct 8
>tca-miR-3825-5p MIMAT0018678 Tribolium castaneum miR-3825-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgttttct 8
||||||||
Sbjct: 1 tgttttct 8
>mdv2-miR-M18-5p MIMAT0004458 Mareks disease miR-M18-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgttttct 8
||||||||
Sbjct: 1 tgttttct 8
>osa-miR5539b MIMAT0031377 Oryza sativa miR5539b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttttct 8
|||||||
Sbjct: 8 gttttct 2
>prd-miR-7920-5p MIMAT0030682 Panagrellus redivivus miR-7920-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgttttc 7
|||||||
Sbjct: 1 tgttttc 7
>bdi-miR7735-5p MIMAT0030206 Brachypodium distachyon miR7735-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgttttc 7
|||||||
Sbjct: 2 tgttttc 8
>bdi-miR7729b-5p MIMAT0030192 Brachypodium distachyon
miR7729b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgttttc 7
|||||||
Sbjct: 1 tgttttc 7
>bdi-miR7729a-5p MIMAT0030190 Brachypodium distachyon
miR7729a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgttttc 7
|||||||
Sbjct: 1 tgttttc 7
>mmu-miR-7234-5p MIMAT0028436 Mus musculus miR-7234-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgttttc 7
|||||||
Sbjct: 2 tgttttc 8
>mtr-miR2592bn-3p MIMAT0022218 Medicago truncatula miR2592bn-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgttttc 7
|||||||
Sbjct: 8 tgttttc 2
>mtr-miR2592bm-3p MIMAT0022214 Medicago truncatula miR2592bm-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgttttc 7
|||||||
Sbjct: 8 tgttttc 2
>osa-miR5539a MIMAT0022175 Oryza sativa miR5539a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttttct 8
|||||||
Sbjct: 8 gttttct 2
>ame-miR-3729 MIMAT0018596 Apis mellifera miR-3729
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgttttc 7
|||||||
Sbjct: 1 tgttttc 7
>osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttttct 8
|||||||
Sbjct: 7 gttttct 1
>oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus
miR-1422k-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttttct 8
|||||||
Sbjct: 7 gttttct 1
>oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus
miR-1422c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttttct 8
|||||||
Sbjct: 7 gttttct 1
>hsa-miR-570-3p MIMAT0003235 Homo sapiens miR-570-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgttttc 7
|||||||
Sbjct: 8 tgttttc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 164
Number of extensions: 140
Number of successful extensions: 113
Number of sequences better than 100.0: 19
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
