BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s15
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR7484i MIMAT0034216 Gossypium raimondii miR7484i 14 20
gra-miR7484h MIMAT0034215 Gossypium raimondii miR7484h 14 20
oha-miR-9-2-5p MIMAT0036955 Ophiophagus hannah miR-9-2-5p 12 80
oha-miR-101b-5p MIMAT0036652 Ophiophagus hannah miR-101b-5p 12 80
efu-miR-582 MIMAT0035119 Eptesicus fuscus miR-582 12 80
str-miR-8367-3p MIMAT0033334 Strongyloides ratti miR-8367-3p 12 80
ppc-miR-8338-2-3p MIMAT0033222 Pristionchus pacificus miR-8338-2-3p 12 80
ppc-miR-8221-3p MIMAT0032877 Pristionchus pacificus miR-8221-3p 12 80
bdi-miR7734-3p MIMAT0030203 Brachypodium distachyon miR7734-3p 12 80
ssc-miR-582 MIMAT0025380 Sus scrofa miR-582 12 80
cgr-miR-101b-5p MIMAT0023728 Cricetulus griseus miR-101b-5p 12 80
aca-miR-101-2-5p MIMAT0021712 Anolis carolinensis miR-101-2-5p 12 80
asu-miR-5358a-5p MIMAT0021578 Ascaris suum miR-5358a-5p 12 80
rno-miR-9b-5p MIMAT0017835 Rattus norvegicus miR-9b-5p 12 80
tgu-miR-101-1-5p MIMAT0031101 Taeniopygia guttata miR-101-1-5p 12 80
eca-miR-582-3p MIMAT0013104 Equus caballus miR-582-3p 12 80
sme-miR-2150 MIMAT0011231 Schmidtea mediterranea miR-2150 12 80
mml-miR-101-2-5p MIMAT0031100 Macaca mulatta miR-101-2-5p 12 80
gma-miR1525 MIMAT0007386 Glycine max miR1525 12 80
mml-miR-1235 MIMAT0005590 Macaca mulatta miR-1235 12 80
mdo-miR-101-2-5p MIMAT0026657 Monodelphis domestica miR-101-2-5p 12 80
hsa-miR-552-5p MIMAT0026615 Homo sapiens miR-552-5p 12 80
gga-miR-101-1-5p MIMAT0026545 Gallus gallus miR-101-1-5p 12 80
mmu-miR-101b-5p MIMAT0017046 Mus musculus miR-101b-5p 12 80
rno-miR-101b-5p MIMAT0017045 Rattus norvegicus miR-101b-5p 12 80
>gra-miR7484i MIMAT0034216 Gossypium raimondii miR7484i
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaaccg 7
|||||||
Sbjct: 2 ttaaccg 8
>gra-miR7484h MIMAT0034215 Gossypium raimondii miR7484h
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaaccg 7
|||||||
Sbjct: 2 ttaaccg 8
>oha-miR-9-2-5p MIMAT0036955 Ophiophagus hannah miR-9-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 8 taaccg 3
>oha-miR-101b-5p MIMAT0036652 Ophiophagus hannah miR-101b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 7 taaccg 2
>efu-miR-582 MIMAT0035119 Eptesicus fuscus miR-582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taaccg 7
||||||
Sbjct: 1 taaccg 6
>str-miR-8367-3p MIMAT0033334 Strongyloides ratti miR-8367-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taaccg 7
||||||
Sbjct: 1 taaccg 6
>ppc-miR-8338-2-3p MIMAT0033222 Pristionchus pacificus
miR-8338-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 8 taaccg 3
>ppc-miR-8221-3p MIMAT0032877 Pristionchus pacificus miR-8221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taaccg 7
||||||
Sbjct: 1 taaccg 6
>bdi-miR7734-3p MIMAT0030203 Brachypodium distachyon miR7734-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttaacc 6
||||||
Sbjct: 1 ttaacc 6
>ssc-miR-582 MIMAT0025380 Sus scrofa miR-582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taaccg 7
||||||
Sbjct: 1 taaccg 6
>cgr-miR-101b-5p MIMAT0023728 Cricetulus griseus miR-101b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 6 taaccg 1
>aca-miR-101-2-5p MIMAT0021712 Anolis carolinensis miR-101-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 7 taaccg 2
>asu-miR-5358a-5p MIMAT0021578 Ascaris suum miR-5358a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 6 taaccg 1
>rno-miR-9b-5p MIMAT0017835 Rattus norvegicus miR-9b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 8 taaccg 3
>tgu-miR-101-1-5p MIMAT0031101 Taeniopygia guttata miR-101-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 7 taaccg 2
>eca-miR-582-3p MIMAT0013104 Equus caballus miR-582-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taaccg 7
||||||
Sbjct: 1 taaccg 6
>sme-miR-2150 MIMAT0011231 Schmidtea mediterranea miR-2150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 6 taaccg 1
>mml-miR-101-2-5p MIMAT0031100 Macaca mulatta miR-101-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 7 taaccg 2
>gma-miR1525 MIMAT0007386 Glycine max miR1525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttaacc 6
||||||
Sbjct: 8 ttaacc 3
>mml-miR-1235 MIMAT0005590 Macaca mulatta miR-1235
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taaccg 7
||||||
Sbjct: 3 taaccg 8
>mdo-miR-101-2-5p MIMAT0026657 Monodelphis domestica
miR-101-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 7 taaccg 2
>hsa-miR-552-5p MIMAT0026615 Homo sapiens miR-552-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttaacc 6
||||||
Sbjct: 3 ttaacc 8
>gga-miR-101-1-5p MIMAT0026545 Gallus gallus miR-101-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 7 taaccg 2
>mmu-miR-101b-5p MIMAT0017046 Mus musculus miR-101b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 7 taaccg 2
>rno-miR-101b-5p MIMAT0017045 Rattus norvegicus miR-101b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taaccg 7
||||||
Sbjct: 7 taaccg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 33
Number of extensions: 31
Number of successful extensions: 25
Number of sequences better than 100.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
