BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv1-miR-m4-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tch-miR-155-5p MIMAT0036472 Tupaia chinensis miR-155-5p                16   6.9  
chi-miR-155-5p MIMAT0035988 Capra hircus miR-155-5p                    16   6.9  
efu-miR-155 MIMAT0035061 Eptesicus fuscus miR-155                      16   6.9  
ssa-miR-155-5p MIMAT0032392 Salmo salar miR-155-5p                     16   6.9  
rno-miR-155-5p MIMAT0030409 Rattus norvegicus miR-155-5p               16   6.9  
ipu-miR-155 MIMAT0029429 Ictalurus punctatus miR-155                   16   6.9  
ccr-miR-155 MIMAT0026231 Cyprinus carpio miR-155                       16   6.9  
ggo-miR-155 MIMAT0024221 Gorilla gorilla miR-155                       16   6.9  
cgr-miR-155 MIMAT0023788 Cricetulus griseus miR-155                    16   6.9  
aca-miR-155-5p MIMAT0021788 Anolis carolinensis miR-155-5p             16   6.9  
pma-miR-155 MIMAT0019485 Petromyzon marinus miR-155                    16   6.9  
ssc-miR-155-5p MIMAT0022959 Sus scrofa miR-155-5p                      16   6.9  
ppy-miR-155 MIMAT0015777 Pongo pygmaeus miR-155                        16   6.9  
tgu-miR-155-5p MIMAT0014612 Taeniopygia guttata miR-155-5p             16   6.9  
eca-miR-155 MIMAT0013182 Equus caballus miR-155                        16   6.9  
bta-miR-155 MIMAT0009241 Bos taurus miR-155                            16   6.9  
ptr-miR-155 MIMAT0008048 Pan troglodytes miR-155                       16   6.9  
cfa-miR-155 MIMAT0006671 Canis familiaris miR-155                      16   6.9  
mml-miR-155 MIMAT0006216 Macaca mulatta miR-155                        16   6.9  
csa-miR-155 MIMAT0006131 Ciona savignyi miR-155                        16   6.9  
cin-miR-155 MIMAT0006105 Ciona intestinalis miR-155                    16   6.9  
oan-miR-155-5p MIMAT0006988 Ornithorhynchus anatinus miR-155-5p        16   6.9  
mdv1-miR-M4-5p MIMAT0003924 Mareks disease miR-M4-5p                   16   6.9  
xtr-miR-155 MIMAT0003608 Xenopus tropicalis miR-155                    16   6.9  
kshv-miR-K12-11-3p MIMAT0002181 Kaposi sarcoma-associated miR-K1...    16   6.9  
dre-miR-155 MIMAT0001851 Danio rerio miR-155                           16   6.9  
gga-miR-155 MIMAT0001106 Gallus gallus miR-155                         16   6.9  
hsa-miR-155-5p MIMAT0000646 Homo sapiens miR-155-5p                    16   6.9  
mmu-miR-155-5p MIMAT0000165 Mus musculus miR-155-5p                    16   6.9  
gsa-miR-2c-5p MIMAT0035276 Gyrodactylus salaris miR-2c-5p              14      27
ppc-miR-8328-3p MIMAT0033201 Pristionchus pacificus miR-8328-3p        14      27
pma-miR-4567 MIMAT0019599 Petromyzon marinus miR-4567                  14      27
cin-miR-4012-3p MIMAT0016513 Ciona intestinalis miR-4012-3p            14      27
sme-miR-124c-2-5p MIMAT0013778 Schmidtea mediterranea miR-124c-2-5p    14      27
dre-miR-2194 MIMAT0011315 Danio rerio miR-2194                         14      27
>tch-miR-155-5p MIMAT0036472 Tupaia chinensis miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>chi-miR-155-5p MIMAT0035988 Capra hircus miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>efu-miR-155 MIMAT0035061 Eptesicus fuscus miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>ssa-miR-155-5p MIMAT0032392 Salmo salar miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>rno-miR-155-5p MIMAT0030409 Rattus norvegicus miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>ipu-miR-155 MIMAT0029429 Ictalurus punctatus miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>ccr-miR-155 MIMAT0026231 Cyprinus carpio miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>ggo-miR-155 MIMAT0024221 Gorilla gorilla miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>cgr-miR-155 MIMAT0023788 Cricetulus griseus miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>aca-miR-155-5p MIMAT0021788 Anolis carolinensis miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>pma-miR-155 MIMAT0019485 Petromyzon marinus miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>ssc-miR-155-5p MIMAT0022959 Sus scrofa miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>ppy-miR-155 MIMAT0015777 Pongo pygmaeus miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>tgu-miR-155-5p MIMAT0014612 Taeniopygia guttata miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>eca-miR-155 MIMAT0013182 Equus caballus miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>bta-miR-155 MIMAT0009241 Bos taurus miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>ptr-miR-155 MIMAT0008048 Pan troglodytes miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>cfa-miR-155 MIMAT0006671 Canis familiaris miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>mml-miR-155 MIMAT0006216 Macaca mulatta miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>csa-miR-155 MIMAT0006131 Ciona savignyi miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>cin-miR-155 MIMAT0006105 Ciona intestinalis miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>oan-miR-155-5p MIMAT0006988 Ornithorhynchus anatinus miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>mdv1-miR-M4-5p MIMAT0003924 Mareks disease miR-M4-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>xtr-miR-155 MIMAT0003608 Xenopus tropicalis miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>kshv-miR-K12-11-3p MIMAT0002181 Kaposi sarcoma-associated
         miR-K12-11-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>dre-miR-155 MIMAT0001851 Danio rerio miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>gga-miR-155 MIMAT0001106 Gallus gallus miR-155
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>hsa-miR-155-5p MIMAT0000646 Homo sapiens miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>mmu-miR-155-5p MIMAT0000165 Mus musculus miR-155-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttaatgct 8
         ||||||||
Sbjct: 1 ttaatgct 8
>gsa-miR-2c-5p MIMAT0035276 Gyrodactylus salaris miR-2c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttaatgc 7
         |||||||
Sbjct: 8 ttaatgc 2
>ppc-miR-8328-3p MIMAT0033201 Pristionchus pacificus miR-8328-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taatgct 8
         |||||||
Sbjct: 1 taatgct 7
>pma-miR-4567 MIMAT0019599 Petromyzon marinus miR-4567
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taatgct 8
         |||||||
Sbjct: 1 taatgct 7
>cin-miR-4012-3p MIMAT0016513 Ciona intestinalis miR-4012-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 taatgct 8
         |||||||
Sbjct: 7 taatgct 1
>sme-miR-124c-2-5p MIMAT0013778 Schmidtea mediterranea
         miR-124c-2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttaatgc 7
         |||||||
Sbjct: 7 ttaatgc 1
>dre-miR-2194 MIMAT0011315 Danio rerio miR-2194
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taatgct 8
         |||||||
Sbjct: 2 taatgct 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 242
Number of extensions: 178
Number of successful extensions: 144
Number of sequences better than 100.0: 35
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 35
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)