BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m4-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-155-5p MIMAT0036472 Tupaia chinensis miR-155-5p 16 6.9
chi-miR-155-5p MIMAT0035988 Capra hircus miR-155-5p 16 6.9
efu-miR-155 MIMAT0035061 Eptesicus fuscus miR-155 16 6.9
ssa-miR-155-5p MIMAT0032392 Salmo salar miR-155-5p 16 6.9
rno-miR-155-5p MIMAT0030409 Rattus norvegicus miR-155-5p 16 6.9
ipu-miR-155 MIMAT0029429 Ictalurus punctatus miR-155 16 6.9
ccr-miR-155 MIMAT0026231 Cyprinus carpio miR-155 16 6.9
ggo-miR-155 MIMAT0024221 Gorilla gorilla miR-155 16 6.9
cgr-miR-155 MIMAT0023788 Cricetulus griseus miR-155 16 6.9
aca-miR-155-5p MIMAT0021788 Anolis carolinensis miR-155-5p 16 6.9
pma-miR-155 MIMAT0019485 Petromyzon marinus miR-155 16 6.9
ssc-miR-155-5p MIMAT0022959 Sus scrofa miR-155-5p 16 6.9
ppy-miR-155 MIMAT0015777 Pongo pygmaeus miR-155 16 6.9
tgu-miR-155-5p MIMAT0014612 Taeniopygia guttata miR-155-5p 16 6.9
eca-miR-155 MIMAT0013182 Equus caballus miR-155 16 6.9
bta-miR-155 MIMAT0009241 Bos taurus miR-155 16 6.9
ptr-miR-155 MIMAT0008048 Pan troglodytes miR-155 16 6.9
cfa-miR-155 MIMAT0006671 Canis familiaris miR-155 16 6.9
mml-miR-155 MIMAT0006216 Macaca mulatta miR-155 16 6.9
csa-miR-155 MIMAT0006131 Ciona savignyi miR-155 16 6.9
cin-miR-155 MIMAT0006105 Ciona intestinalis miR-155 16 6.9
oan-miR-155-5p MIMAT0006988 Ornithorhynchus anatinus miR-155-5p 16 6.9
mdv1-miR-M4-5p MIMAT0003924 Mareks disease miR-M4-5p 16 6.9
xtr-miR-155 MIMAT0003608 Xenopus tropicalis miR-155 16 6.9
kshv-miR-K12-11-3p MIMAT0002181 Kaposi sarcoma-associated miR-K1... 16 6.9
dre-miR-155 MIMAT0001851 Danio rerio miR-155 16 6.9
gga-miR-155 MIMAT0001106 Gallus gallus miR-155 16 6.9
hsa-miR-155-5p MIMAT0000646 Homo sapiens miR-155-5p 16 6.9
mmu-miR-155-5p MIMAT0000165 Mus musculus miR-155-5p 16 6.9
gsa-miR-2c-5p MIMAT0035276 Gyrodactylus salaris miR-2c-5p 14 27
ppc-miR-8328-3p MIMAT0033201 Pristionchus pacificus miR-8328-3p 14 27
pma-miR-4567 MIMAT0019599 Petromyzon marinus miR-4567 14 27
cin-miR-4012-3p MIMAT0016513 Ciona intestinalis miR-4012-3p 14 27
sme-miR-124c-2-5p MIMAT0013778 Schmidtea mediterranea miR-124c-2-5p 14 27
dre-miR-2194 MIMAT0011315 Danio rerio miR-2194 14 27
>tch-miR-155-5p MIMAT0036472 Tupaia chinensis miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>chi-miR-155-5p MIMAT0035988 Capra hircus miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>efu-miR-155 MIMAT0035061 Eptesicus fuscus miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>ssa-miR-155-5p MIMAT0032392 Salmo salar miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>rno-miR-155-5p MIMAT0030409 Rattus norvegicus miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>ipu-miR-155 MIMAT0029429 Ictalurus punctatus miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>ccr-miR-155 MIMAT0026231 Cyprinus carpio miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>ggo-miR-155 MIMAT0024221 Gorilla gorilla miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>cgr-miR-155 MIMAT0023788 Cricetulus griseus miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>aca-miR-155-5p MIMAT0021788 Anolis carolinensis miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>pma-miR-155 MIMAT0019485 Petromyzon marinus miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>ssc-miR-155-5p MIMAT0022959 Sus scrofa miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>ppy-miR-155 MIMAT0015777 Pongo pygmaeus miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>tgu-miR-155-5p MIMAT0014612 Taeniopygia guttata miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>eca-miR-155 MIMAT0013182 Equus caballus miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>bta-miR-155 MIMAT0009241 Bos taurus miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>ptr-miR-155 MIMAT0008048 Pan troglodytes miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>cfa-miR-155 MIMAT0006671 Canis familiaris miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>mml-miR-155 MIMAT0006216 Macaca mulatta miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>csa-miR-155 MIMAT0006131 Ciona savignyi miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>cin-miR-155 MIMAT0006105 Ciona intestinalis miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>oan-miR-155-5p MIMAT0006988 Ornithorhynchus anatinus miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>mdv1-miR-M4-5p MIMAT0003924 Mareks disease miR-M4-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>xtr-miR-155 MIMAT0003608 Xenopus tropicalis miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>kshv-miR-K12-11-3p MIMAT0002181 Kaposi sarcoma-associated
miR-K12-11-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>dre-miR-155 MIMAT0001851 Danio rerio miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>gga-miR-155 MIMAT0001106 Gallus gallus miR-155
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>hsa-miR-155-5p MIMAT0000646 Homo sapiens miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>mmu-miR-155-5p MIMAT0000165 Mus musculus miR-155-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaatgct 8
||||||||
Sbjct: 1 ttaatgct 8
>gsa-miR-2c-5p MIMAT0035276 Gyrodactylus salaris miR-2c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttaatgc 7
|||||||
Sbjct: 8 ttaatgc 2
>ppc-miR-8328-3p MIMAT0033201 Pristionchus pacificus miR-8328-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taatgct 8
|||||||
Sbjct: 1 taatgct 7
>pma-miR-4567 MIMAT0019599 Petromyzon marinus miR-4567
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taatgct 8
|||||||
Sbjct: 1 taatgct 7
>cin-miR-4012-3p MIMAT0016513 Ciona intestinalis miR-4012-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatgct 8
|||||||
Sbjct: 7 taatgct 1
>sme-miR-124c-2-5p MIMAT0013778 Schmidtea mediterranea
miR-124c-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttaatgc 7
|||||||
Sbjct: 7 ttaatgc 1
>dre-miR-2194 MIMAT0011315 Danio rerio miR-2194
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taatgct 8
|||||||
Sbjct: 2 taatgct 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 242
Number of extensions: 178
Number of successful extensions: 144
Number of sequences better than 100.0: 35
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 35
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)