BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart22
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART22 MIMAT0010132 Epstein Barr miR-BART22 16 6.9
ppy-miR-520i MIMAT0036452 Pongo pygmaeus miR-520i 14 27
ggo-miR-524-5p MIMAT0036423 Gorilla gorilla miR-524-5p 14 27
bra-miR9553-5p MIMAT0035659 Brassica rapa miR9553-5p 14 27
atr-miR8607 MIMAT0033896 Amborella trichopoda miR8607 14 27
pxy-miR-8496 MIMAT0033706 Plutella xylostella miR-8496 14 27
cbn-miR-85 MIMAT0029780 Caenorhabditis brenneri miR-85 14 27
mdo-miR-7371c-5p MIMAT0028778 Monodelphis domestica miR-7371c-5p 14 27
mml-miR-1283 MIMAT0024352 Macaca mulatta miR-1283 14 27
bfl-miR-4875d-3p MIMAT0020458 Branchiostoma floridae miR-4875d-3p 14 27
ppy-miR-524-5p MIMAT0015980 Pongo pygmaeus miR-524-5p 14 27
ppy-miR-520d-5p MIMAT0015971 Pongo pygmaeus miR-520d-5p 14 27
bmo-miR-3290 MIMAT0015477 Bombyx mori miR-3290 14 27
api-miR-3037 MIMAT0014774 Acyrthosiphon pisum miR-3037 14 27
mml-miR-524-5p MIMAT0012777 Macaca mulatta miR-524-5p 14 27
crm-miR-85 MIMAT0011531 Caenorhabditis remanei miR-85 14 27
mml-miR-518a-5p MIMAT0006377 Macaca mulatta miR-518a-5p 14 27
hsa-miR-520d-5p MIMAT0002855 Homo sapiens miR-520d-5p 14 27
hsa-miR-524-5p MIMAT0002849 Homo sapiens miR-524-5p 14 27
cbr-miR-85 MIMAT0000490 Caenorhabditis briggsae miR-85 14 27
cel-miR-85-3p MIMAT0000058 Caenorhabditis elegans miR-85-3p 14 27
>ebv-miR-BART22 MIMAT0010132 Epstein Barr miR-BART22
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacaaag 8
||||||||
Sbjct: 1 ttacaaag 8
>ppy-miR-520i MIMAT0036452 Pongo pygmaeus miR-520i
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>ggo-miR-524-5p MIMAT0036423 Gorilla gorilla miR-524-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>bra-miR9553-5p MIMAT0035659 Brassica rapa miR9553-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 1 tacaaag 7
>atr-miR8607 MIMAT0033896 Amborella trichopoda miR8607
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacaaa 7
|||||||
Sbjct: 7 ttacaaa 1
>pxy-miR-8496 MIMAT0033706 Plutella xylostella miR-8496
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacaaa 7
|||||||
Sbjct: 8 ttacaaa 2
>cbn-miR-85 MIMAT0029780 Caenorhabditis brenneri miR-85
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 1 tacaaag 7
>mdo-miR-7371c-5p MIMAT0028778 Monodelphis domestica
miR-7371c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tacaaag 8
|||||||
Sbjct: 7 tacaaag 1
>mml-miR-1283 MIMAT0024352 Macaca mulatta miR-1283
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>bfl-miR-4875d-3p MIMAT0020458 Branchiostoma floridae
miR-4875d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 1 tacaaag 7
>ppy-miR-524-5p MIMAT0015980 Pongo pygmaeus miR-524-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>ppy-miR-520d-5p MIMAT0015971 Pongo pygmaeus miR-520d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>bmo-miR-3290 MIMAT0015477 Bombyx mori miR-3290
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacaaa 7
|||||||
Sbjct: 7 ttacaaa 1
>api-miR-3037 MIMAT0014774 Acyrthosiphon pisum miR-3037
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacaaa 7
|||||||
Sbjct: 1 ttacaaa 7
>mml-miR-524-5p MIMAT0012777 Macaca mulatta miR-524-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>crm-miR-85 MIMAT0011531 Caenorhabditis remanei miR-85
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 1 tacaaag 7
>mml-miR-518a-5p MIMAT0006377 Macaca mulatta miR-518a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>hsa-miR-520d-5p MIMAT0002855 Homo sapiens miR-520d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>hsa-miR-524-5p MIMAT0002849 Homo sapiens miR-524-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 2 tacaaag 8
>cbr-miR-85 MIMAT0000490 Caenorhabditis briggsae miR-85
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 1 tacaaag 7
>cel-miR-85-3p MIMAT0000058 Caenorhabditis elegans miR-85-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacaaag 8
|||||||
Sbjct: 1 tacaaag 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 153
Number of extensions: 131
Number of successful extensions: 110
Number of sequences better than 100.0: 21
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
