BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvsa-miR-hsur5-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvsa-miR-HSUR5-3p MIMAT0022683 Herpesvirus saimiri miR-HSUR5-3p 16 6.9
chi-miR-214-3p MIMAT0036059 Capra hircus miR-214-3p 14 27
efu-miR-214 MIMAT0035078 Eptesicus fuscus miR-214 14 27
cfa-miR-8875 MIMAT0034375 Canis familiaris miR-8875 14 27
ssa-miR-214-3p MIMAT0032515 Salmo salar miR-214-3p 14 27
ccr-miR-214 MIMAT0026269 Cyprinus carpio miR-214 14 27
cgr-miR-214-3p MIMAT0023852 Cricetulus griseus miR-214-3p 14 27
ola-miR-214 MIMAT0022640 Oryzias latipes miR-214 14 27
hsa-miR-4999-5p MIMAT0021017 Homo sapiens miR-4999-5p 14 27
pma-miR-4545-3p MIMAT0019576 Petromyzon marinus miR-4545-3p 14 27
dps-miR-2514 MIMAT0012299 Drosophila pseudoobscura miR-2514 14 27
dps-miR-971-5p MIMAT0012225 Drosophila pseudoobscura miR-971-5p 14 27
hsa-miR-1537-5p MIMAT0026765 Homo sapiens miR-1537-5p 14 27
dme-miR-971-5p MIMAT0020868 Drosophila melanogaster miR-971-5p 14 27
gga-miR-196-2-3p MIMAT0026504 Gallus gallus miR-196-2-3p 14 27
>hvsa-miR-HSUR5-3p MIMAT0022683 Herpesvirus saimiri miR-HSUR5-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacagca 8
||||||||
Sbjct: 1 ttacagca 8
>chi-miR-214-3p MIMAT0036059 Capra hircus miR-214-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagca 8
|||||||
Sbjct: 1 tacagca 7
>efu-miR-214 MIMAT0035078 Eptesicus fuscus miR-214
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagca 8
|||||||
Sbjct: 1 tacagca 7
>cfa-miR-8875 MIMAT0034375 Canis familiaris miR-8875
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tacagca 8
|||||||
Sbjct: 7 tacagca 1
>ssa-miR-214-3p MIMAT0032515 Salmo salar miR-214-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagca 8
|||||||
Sbjct: 1 tacagca 7
>ccr-miR-214 MIMAT0026269 Cyprinus carpio miR-214
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagca 8
|||||||
Sbjct: 1 tacagca 7
>cgr-miR-214-3p MIMAT0023852 Cricetulus griseus miR-214-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagca 8
|||||||
Sbjct: 1 tacagca 7
>ola-miR-214 MIMAT0022640 Oryzias latipes miR-214
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagca 8
|||||||
Sbjct: 2 tacagca 8
>hsa-miR-4999-5p MIMAT0021017 Homo sapiens miR-4999-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tacagca 8
|||||||
Sbjct: 7 tacagca 1
>pma-miR-4545-3p MIMAT0019576 Petromyzon marinus miR-4545-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagca 8
|||||||
Sbjct: 1 tacagca 7
>dps-miR-2514 MIMAT0012299 Drosophila pseudoobscura miR-2514
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagc 7
|||||||
Sbjct: 1 ttacagc 7
>dps-miR-971-5p MIMAT0012225 Drosophila pseudoobscura miR-971-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagc 7
|||||||
Sbjct: 7 ttacagc 1
>hsa-miR-1537-5p MIMAT0026765 Homo sapiens miR-1537-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagc 7
|||||||
Sbjct: 8 ttacagc 2
>dme-miR-971-5p MIMAT0020868 Drosophila melanogaster miR-971-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagc 7
|||||||
Sbjct: 7 ttacagc 1
>gga-miR-196-2-3p MIMAT0026504 Gallus gallus miR-196-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagca 8
|||||||
Sbjct: 2 tacagca 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 183
Number of extensions: 167
Number of successful extensions: 138
Number of sequences better than 100.0: 15
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
