BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-2187-3p MIMAT0032521 Salmo salar miR-2187-3p 14 20
mml-miR-1243-5p MIMAT0027116 Macaca mulatta miR-1243-5p 14 20
cin-miR-5609-3p MIMAT0022346 Ciona intestinalis miR-5609-3p 14 20
mtr-miR5222 MIMAT0021179 Medicago truncatula miR5222 14 20
hsa-miR-5095 MIMAT0020600 Homo sapiens miR-5095 14 20
dre-miR-2187-3p MIMAT0011297 Danio rerio miR-2187-3p 14 20
kshv-miR-K12-1-5p MIMAT0002182 Kaposi sarcoma-associated miR-K12... 14 20
rno-miR-486 MIMAT0037265 Rattus norvegicus miR-486 12 80
efu-miR-9366 MIMAT0035191 Eptesicus fuscus miR-9366 12 80
efu-miR-9344 MIMAT0035113 Eptesicus fuscus miR-9344 12 80
efu-miR-486 MIMAT0035060 Eptesicus fuscus miR-486 12 80
eca-miR-8961 MIMAT0034495 Equus caballus miR-8961 12 80
gra-miR8785 MIMAT0034237 Gossypium raimondii miR8785 12 80
pxy-miR-8525 MIMAT0033767 Plutella xylostella miR-8525 12 80
oar-miR-10b MIMAT0030031 Ovis aries miR-10b 12 80
mmu-miR-7660-3p MIMAT0029827 Mus musculus miR-7660-3p 12 80
mdo-miR-7323-5p MIMAT0028646 Monodelphis domestica miR-7323-5p 12 80
sbi-miR5568c-3p MIMAT0026401 Sorghum bicolor miR5568c-3p 12 80
mmu-miR-6912-5p MIMAT0027724 Mus musculus miR-6912-5p 12 80
gga-miR-3607-3p MIMAT0025608 Gallus gallus miR-3607-3p 12 80
hsa-miR-6504-3p MIMAT0025465 Homo sapiens miR-6504-3p 12 80
hme-miR-2756 MIMAT0024953 Heliconius melpomene miR-2756 12 80
hme-miR-10 MIMAT0024932 Heliconius melpomene miR-10 12 80
mml-miR-1185-3p MIMAT0027107 Macaca mulatta miR-1185-3p 12 80
ggo-miR-582 MIMAT0024202 Gorilla gorilla miR-582 12 80
ggo-miR-486 MIMAT0024149 Gorilla gorilla miR-486 12 80
cgr-miR-486-5p MIMAT0023967 Cricetulus griseus miR-486-5p 12 80
nta-miR6019b MIMAT0023586 Nicotiana tabacum miR6019b 12 80
nta-miR6019a MIMAT0023583 Nicotiana tabacum miR6019a 12 80
hhv6b-miR-Ro6-2-3p MIMAT0026459 Human herpesvirus miR-Ro6-2-3p 12 80
hvsa-miR-HSUR5-3p MIMAT0022683 Herpesvirus saimiri miR-HSUR5-3p 12 80
asu-miR-993-5p MIMAT0021531 Ascaris suum miR-993-5p 12 80
osa-miR5156 MIMAT0021106 Oryza sativa miR5156 12 80
nlo-miR-10 MIMAT0018416 Nasonia longicornis miR-10 12 80
gma-miR4343b MIMAT0018306 Glycine max miR4343b 12 80
tca-miR-3820-3p MIMAT0018667 Tribolium castaneum miR-3820-3p 12 80
hsa-miR-3686 MIMAT0018114 Homo sapiens miR-3686 12 80
cin-miR-4014-3p MIMAT0016519 Ciona intestinalis miR-4014-3p 12 80
ppy-miR-600 MIMAT0016042 Pongo pygmaeus miR-600 12 80
ppy-miR-582-5p MIMAT0016024 Pongo pygmaeus miR-582-5p 12 80
ppy-miR-486-5p MIMAT0015904 Pongo pygmaeus miR-486-5p 12 80
nvi-miR-10 MIMAT0015676 Nasonia vitripennis miR-10 12 80
bmo-miR-3317 MIMAT0015505 Bombyx mori miR-3317 12 80
mmu-miR-486b-5p MIMAT0014943 Mus musculus miR-486b-5p 12 80
cqu-miR-10-5p MIMAT0014404 Culex quinquefasciatus miR-10-5p 12 80
aae-miR-10 MIMAT0014277 Aedes aegypti miR-10 12 80
api-miR-10 MIMAT0014128 Acyrthosiphon pisum miR-10 12 80
ssc-miR-486 MIMAT0013886 Sus scrofa miR-486 12 80
osa-miR2875 MIMAT0013825 Oryza sativa miR2875 12 80
eca-miR-486-5p MIMAT0013186 Equus caballus miR-486-5p 12 80
eca-miR-582-5p MIMAT0013103 Equus caballus miR-582-5p 12 80
bmo-miR-2756-5p MIMAT0013623 Bombyx mori miR-2756-5p 12 80
dps-miR-2565-3p MIMAT0012393 Drosophila pseudoobscura miR-2565-3p 12 80
dps-miR-2514 MIMAT0012299 Drosophila pseudoobscura miR-2514 12 80
bta-miR-2367-5p MIMAT0011909 Bos taurus miR-2367-5p 12 80
hsa-miR-2054 MIMAT0009979 Homo sapiens miR-2054 12 80
bta-miR-582 MIMAT0009351 Bos taurus miR-582 12 80
bta-miR-486 MIMAT0009329 Bos taurus miR-486 12 80
dya-miR-10 MIMAT0009082 Drosophila yakuba miR-10 12 80
dwi-miR-10 MIMAT0009033 Drosophila willistoni miR-10 12 80
dvi-miR-10-5p MIMAT0008960 Drosophila virilis miR-10-5p 12 80
dsi-miR-10 MIMAT0008887 Drosophila simulans miR-10 12 80
dse-miR-10 MIMAT0008784 Drosophila sechellia miR-10 12 80
dpe-miR-10 MIMAT0008754 Drosophila persimilis miR-10 12 80
dmo-miR-10 MIMAT0008693 Drosophila mojavensis miR-10 12 80
dgr-miR-10 MIMAT0008601 Drosophila grimshawi miR-10 12 80
der-miR-10 MIMAT0008549 Drosophila erecta miR-10 12 80
dan-miR-10 MIMAT0008476 Drosophila ananassae miR-10 12 80
ptr-miR-600 MIMAT0008269 Pan troglodytes miR-600 12 80
ptr-miR-486 MIMAT0008160 Pan troglodytes miR-486 12 80
cfa-miR-486 MIMAT0011132 Canis familiaris miR-486 12 80
mml-miR-600 MIMAT0006457 Macaca mulatta miR-600 12 80
mml-miR-582-5p MIMAT0006443 Macaca mulatta miR-582-5p 12 80
mml-miR-486-5p MIMAT0006344 Macaca mulatta miR-486-5p 12 80
gga-miR-1775-3p MIMAT0007686 Gallus gallus miR-1775-3p 12 80
hsa-miR-1537-5p MIMAT0026765 Homo sapiens miR-1537-5p 12 80
cel-miR-1019-3p MIMAT0005032 Caenorhabditis elegans miR-1019-3p 12 80
ame-miR-10 MIMAT0004419 Apis mellifera miR-10 12 80
bmo-miR-10-5p MIMAT0004195 Bombyx mori miR-10-5p 12 80
rlcv-miR-rL1-15-3p MIMAT0003446 Rhesus lymphocryptovirus miR-rL1... 12 80
hsa-miR-600 MIMAT0003268 Homo sapiens miR-600 12 80
hsa-miR-582-5p MIMAT0003247 Homo sapiens miR-582-5p 12 80
mmu-miR-486a-5p MIMAT0003130 Mus musculus miR-486a-5p 12 80
hsa-miR-486-5p MIMAT0002177 Homo sapiens miR-486-5p 12 80
ptc-miR475d-3p MIMAT0002070 Populus trichocarpa miR475d-3p 12 80
ptc-miR475b-3p MIMAT0002068 Populus trichocarpa miR475b-3p 12 80
ptc-miR475a-3p MIMAT0002067 Populus trichocarpa miR475a-3p 12 80
aga-miR-10 MIMAT0001497 Anopheles gambiae miR-10 12 80
dps-miR-10 MIMAT0001214 Drosophila pseudoobscura miR-10 12 80
dme-miR-10-5p MIMAT0000115 Drosophila melanogaster miR-10-5p 12 80
>ssa-miR-2187-3p MIMAT0032521 Salmo salar miR-2187-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagg 7
|||||||
Sbjct: 1 ttacagg 7
>mml-miR-1243-5p MIMAT0027116 Macaca mulatta miR-1243-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagg 7
|||||||
Sbjct: 8 ttacagg 2
>cin-miR-5609-3p MIMAT0022346 Ciona intestinalis miR-5609-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagg 7
|||||||
Sbjct: 2 ttacagg 8
>mtr-miR5222 MIMAT0021179 Medicago truncatula miR5222
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagg 7
|||||||
Sbjct: 1 ttacagg 7
>hsa-miR-5095 MIMAT0020600 Homo sapiens miR-5095
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagg 7
|||||||
Sbjct: 1 ttacagg 7
>dre-miR-2187-3p MIMAT0011297 Danio rerio miR-2187-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagg 7
|||||||
Sbjct: 1 ttacagg 7
>kshv-miR-K12-1-5p MIMAT0002182 Kaposi sarcoma-associated
miR-K12-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagg 7
|||||||
Sbjct: 2 ttacagg 8
>rno-miR-486 MIMAT0037265 Rattus norvegicus miR-486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>efu-miR-9366 MIMAT0035191 Eptesicus fuscus miR-9366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tacagg 7
||||||
Sbjct: 1 tacagg 6
>efu-miR-9344 MIMAT0035113 Eptesicus fuscus miR-9344
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>efu-miR-486 MIMAT0035060 Eptesicus fuscus miR-486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>eca-miR-8961 MIMAT0034495 Equus caballus miR-8961
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>gra-miR8785 MIMAT0034237 Gossypium raimondii miR8785
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>pxy-miR-8525 MIMAT0033767 Plutella xylostella miR-8525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>oar-miR-10b MIMAT0030031 Ovis aries miR-10b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>mmu-miR-7660-3p MIMAT0029827 Mus musculus miR-7660-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttacag 6
||||||
Sbjct: 8 ttacag 3
>mdo-miR-7323-5p MIMAT0028646 Monodelphis domestica miR-7323-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>sbi-miR5568c-3p MIMAT0026401 Sorghum bicolor miR5568c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>mmu-miR-6912-5p MIMAT0027724 Mus musculus miR-6912-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tacagg 7
||||||
Sbjct: 1 tacagg 6
>gga-miR-3607-3p MIMAT0025608 Gallus gallus miR-3607-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttacag 6
||||||
Sbjct: 6 ttacag 1
>hsa-miR-6504-3p MIMAT0025465 Homo sapiens miR-6504-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>hme-miR-2756 MIMAT0024953 Heliconius melpomene miR-2756
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>hme-miR-10 MIMAT0024932 Heliconius melpomene miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>mml-miR-1185-3p MIMAT0027107 Macaca mulatta miR-1185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tacagg 7
||||||
Sbjct: 3 tacagg 8
>ggo-miR-582 MIMAT0024202 Gorilla gorilla miR-582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>ggo-miR-486 MIMAT0024149 Gorilla gorilla miR-486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>cgr-miR-486-5p MIMAT0023967 Cricetulus griseus miR-486-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>nta-miR6019b MIMAT0023586 Nicotiana tabacum miR6019b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tacagg 7
||||||
Sbjct: 1 tacagg 6
>nta-miR6019a MIMAT0023583 Nicotiana tabacum miR6019a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tacagg 7
||||||
Sbjct: 1 tacagg 6
>hhv6b-miR-Ro6-2-3p MIMAT0026459 Human herpesvirus miR-Ro6-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>hvsa-miR-HSUR5-3p MIMAT0022683 Herpesvirus saimiri miR-HSUR5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>asu-miR-993-5p MIMAT0021531 Ascaris suum miR-993-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>osa-miR5156 MIMAT0021106 Oryza sativa miR5156
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>nlo-miR-10 MIMAT0018416 Nasonia longicornis miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>gma-miR4343b MIMAT0018306 Glycine max miR4343b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>tca-miR-3820-3p MIMAT0018667 Tribolium castaneum miR-3820-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 6 tacagg 1
>hsa-miR-3686 MIMAT0018114 Homo sapiens miR-3686
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttacag 6
||||||
Sbjct: 8 ttacag 3
>cin-miR-4014-3p MIMAT0016519 Ciona intestinalis miR-4014-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>ppy-miR-600 MIMAT0016042 Pongo pygmaeus miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>ppy-miR-582-5p MIMAT0016024 Pongo pygmaeus miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>ppy-miR-486-5p MIMAT0015904 Pongo pygmaeus miR-486-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>nvi-miR-10 MIMAT0015676 Nasonia vitripennis miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>bmo-miR-3317 MIMAT0015505 Bombyx mori miR-3317
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tacagg 7
||||||
Sbjct: 1 tacagg 6
>mmu-miR-486b-5p MIMAT0014943 Mus musculus miR-486b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>cqu-miR-10-5p MIMAT0014404 Culex quinquefasciatus miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>aae-miR-10 MIMAT0014277 Aedes aegypti miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>api-miR-10 MIMAT0014128 Acyrthosiphon pisum miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>ssc-miR-486 MIMAT0013886 Sus scrofa miR-486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>osa-miR2875 MIMAT0013825 Oryza sativa miR2875
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>eca-miR-486-5p MIMAT0013186 Equus caballus miR-486-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>eca-miR-582-5p MIMAT0013103 Equus caballus miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>bmo-miR-2756-5p MIMAT0013623 Bombyx mori miR-2756-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dps-miR-2565-3p MIMAT0012393 Drosophila pseudoobscura
miR-2565-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dps-miR-2514 MIMAT0012299 Drosophila pseudoobscura miR-2514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>bta-miR-2367-5p MIMAT0011909 Bos taurus miR-2367-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>hsa-miR-2054 MIMAT0009979 Homo sapiens miR-2054
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttacag 6
||||||
Sbjct: 6 ttacag 1
>bta-miR-582 MIMAT0009351 Bos taurus miR-582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>bta-miR-486 MIMAT0009329 Bos taurus miR-486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>dya-miR-10 MIMAT0009082 Drosophila yakuba miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dwi-miR-10 MIMAT0009033 Drosophila willistoni miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dvi-miR-10-5p MIMAT0008960 Drosophila virilis miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dsi-miR-10 MIMAT0008887 Drosophila simulans miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dse-miR-10 MIMAT0008784 Drosophila sechellia miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dpe-miR-10 MIMAT0008754 Drosophila persimilis miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dmo-miR-10 MIMAT0008693 Drosophila mojavensis miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dgr-miR-10 MIMAT0008601 Drosophila grimshawi miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>der-miR-10 MIMAT0008549 Drosophila erecta miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dan-miR-10 MIMAT0008476 Drosophila ananassae miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>ptr-miR-600 MIMAT0008269 Pan troglodytes miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>ptr-miR-486 MIMAT0008160 Pan troglodytes miR-486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>cfa-miR-486 MIMAT0011132 Canis familiaris miR-486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>mml-miR-600 MIMAT0006457 Macaca mulatta miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>mml-miR-582-5p MIMAT0006443 Macaca mulatta miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>mml-miR-486-5p MIMAT0006344 Macaca mulatta miR-486-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>gga-miR-1775-3p MIMAT0007686 Gallus gallus miR-1775-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>hsa-miR-1537-5p MIMAT0026765 Homo sapiens miR-1537-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttacag 6
||||||
Sbjct: 8 ttacag 3
>cel-miR-1019-3p MIMAT0005032 Caenorhabditis elegans miR-1019-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttacag 6
||||||
Sbjct: 6 ttacag 1
>ame-miR-10 MIMAT0004419 Apis mellifera miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>bmo-miR-10-5p MIMAT0004195 Bombyx mori miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>rlcv-miR-rL1-15-3p MIMAT0003446 Rhesus lymphocryptovirus
miR-rL1-15-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>hsa-miR-600 MIMAT0003268 Homo sapiens miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 3 ttacag 8
>hsa-miR-582-5p MIMAT0003247 Homo sapiens miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>mmu-miR-486a-5p MIMAT0003130 Mus musculus miR-486a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>hsa-miR-486-5p MIMAT0002177 Homo sapiens miR-486-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 7 tacagg 2
>ptc-miR475d-3p MIMAT0002070 Populus trichocarpa miR475d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>ptc-miR475b-3p MIMAT0002068 Populus trichocarpa miR475b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>ptc-miR475a-3p MIMAT0002067 Populus trichocarpa miR475a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttacag 6
||||||
Sbjct: 1 ttacag 6
>aga-miR-10 MIMAT0001497 Anopheles gambiae miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dps-miR-10 MIMAT0001214 Drosophila pseudoobscura miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
>dme-miR-10-5p MIMAT0000115 Drosophila melanogaster miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tacagg 7
||||||
Sbjct: 8 tacagg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 113
Number of extensions: 106
Number of successful extensions: 90
Number of sequences better than 100.0: 90
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 90
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
