BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hhv6b-miR-ro6-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ggo-miR-582 MIMAT0024202 Gorilla gorilla miR-582 16 6.9
hhv6b-miR-Ro6-2-3p MIMAT0026459 Human herpesvirus miR-Ro6-2-3p 16 6.9
ppy-miR-582-5p MIMAT0016024 Pongo pygmaeus miR-582-5p 16 6.9
eca-miR-582-5p MIMAT0013103 Equus caballus miR-582-5p 16 6.9
bta-miR-582 MIMAT0009351 Bos taurus miR-582 16 6.9
mml-miR-582-5p MIMAT0006443 Macaca mulatta miR-582-5p 16 6.9
hsa-miR-582-5p MIMAT0003247 Homo sapiens miR-582-5p 16 6.9
ssc-miR-9834-5p MIMAT0037052 Sus scrofa miR-9834-5p 14 27
oha-miR-20b-3p MIMAT0036806 Ophiophagus hannah miR-20b-3p 14 27
chi-miR-582-5p MIMAT0036279 Capra hircus miR-582-5p 14 27
eca-miR-8961 MIMAT0034495 Equus caballus miR-8961 14 27
dev-miR-D8-3p MIMAT0028179 Duck enteritis miR-D8-3p 14 27
hvu-miR6212 MIMAT0024840 Hordeum vulgare miR6212 14 27
aca-miR-20b-3p MIMAT0021864 Anolis carolinensis miR-20b-3p 14 27
hsa-miR-3607-3p MIMAT0017985 Homo sapiens miR-3607-3p 14 27
bmo-miR-3401 MIMAT0015605 Bombyx mori miR-3401 14 27
tgu-miR-20b-3p MIMAT0027017 Taeniopygia guttata miR-20b-3p 14 27
rno-miR-582-5p MIMAT0012833 Rattus norvegicus miR-582-5p 14 27
bta-miR-2384 MIMAT0011933 Bos taurus miR-2384 14 27
cfa-miR-582 MIMAT0009916 Canis familiaris miR-582 14 27
ptr-miR-582 MIMAT0008255 Pan troglodytes miR-582 14 27
osa-miR1872 MIMAT0007825 Oryza sativa miR1872 14 27
oan-miR-20b-3p MIMAT0006854 Ornithorhynchus anatinus miR-20b-3p 14 27
mmu-miR-582-5p MIMAT0005291 Mus musculus miR-582-5p 14 27
kshv-miR-K12-2-5p MIMAT0002183 Kaposi sarcoma-associated miR-K12... 14 27
ptc-miR475b-3p MIMAT0002068 Populus trichocarpa miR475b-3p 14 27
ptc-miR475a-3p MIMAT0002067 Populus trichocarpa miR475a-3p 14 27
gga-miR-20b-3p MIMAT0026551 Gallus gallus miR-20b-3p 14 27
>ggo-miR-582 MIMAT0024202 Gorilla gorilla miR-582
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacagtt 8
||||||||
Sbjct: 1 ttacagtt 8
>hhv6b-miR-Ro6-2-3p MIMAT0026459 Human herpesvirus miR-Ro6-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacagtt 8
||||||||
Sbjct: 1 ttacagtt 8
>ppy-miR-582-5p MIMAT0016024 Pongo pygmaeus miR-582-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacagtt 8
||||||||
Sbjct: 1 ttacagtt 8
>eca-miR-582-5p MIMAT0013103 Equus caballus miR-582-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacagtt 8
||||||||
Sbjct: 1 ttacagtt 8
>bta-miR-582 MIMAT0009351 Bos taurus miR-582
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacagtt 8
||||||||
Sbjct: 1 ttacagtt 8
>mml-miR-582-5p MIMAT0006443 Macaca mulatta miR-582-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacagtt 8
||||||||
Sbjct: 1 ttacagtt 8
>hsa-miR-582-5p MIMAT0003247 Homo sapiens miR-582-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttacagtt 8
||||||||
Sbjct: 1 ttacagtt 8
>ssc-miR-9834-5p MIMAT0037052 Sus scrofa miR-9834-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagtt 8
|||||||
Sbjct: 1 tacagtt 7
>oha-miR-20b-3p MIMAT0036806 Ophiophagus hannah miR-20b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagt 7
|||||||
Sbjct: 7 ttacagt 1
>chi-miR-582-5p MIMAT0036279 Capra hircus miR-582-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagtt 8
|||||||
Sbjct: 1 tacagtt 7
>eca-miR-8961 MIMAT0034495 Equus caballus miR-8961
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagt 7
|||||||
Sbjct: 1 ttacagt 7
>dev-miR-D8-3p MIMAT0028179 Duck enteritis miR-D8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagtt 8
|||||||
Sbjct: 1 tacagtt 7
>hvu-miR6212 MIMAT0024840 Hordeum vulgare miR6212
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagtt 8
|||||||
Sbjct: 2 tacagtt 8
>aca-miR-20b-3p MIMAT0021864 Anolis carolinensis miR-20b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagt 7
|||||||
Sbjct: 7 ttacagt 1
>hsa-miR-3607-3p MIMAT0017985 Homo sapiens miR-3607-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagt 7
|||||||
Sbjct: 7 ttacagt 1
>bmo-miR-3401 MIMAT0015605 Bombyx mori miR-3401
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagt 7
|||||||
Sbjct: 2 ttacagt 8
>tgu-miR-20b-3p MIMAT0027017 Taeniopygia guttata miR-20b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagt 7
|||||||
Sbjct: 7 ttacagt 1
>rno-miR-582-5p MIMAT0012833 Rattus norvegicus miR-582-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagtt 8
|||||||
Sbjct: 1 tacagtt 7
>bta-miR-2384 MIMAT0011933 Bos taurus miR-2384
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tacagtt 8
|||||||
Sbjct: 7 tacagtt 1
>cfa-miR-582 MIMAT0009916 Canis familiaris miR-582
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagtt 8
|||||||
Sbjct: 1 tacagtt 7
>ptr-miR-582 MIMAT0008255 Pan troglodytes miR-582
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagtt 8
|||||||
Sbjct: 1 tacagtt 7
>osa-miR1872 MIMAT0007825 Oryza sativa miR1872
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tacagtt 8
|||||||
Sbjct: 8 tacagtt 2
>oan-miR-20b-3p MIMAT0006854 Ornithorhynchus anatinus miR-20b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagt 7
|||||||
Sbjct: 7 ttacagt 1
>mmu-miR-582-5p MIMAT0005291 Mus musculus miR-582-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tacagtt 8
|||||||
Sbjct: 2 tacagtt 8
>kshv-miR-K12-2-5p MIMAT0002183 Kaposi sarcoma-associated
miR-K12-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tacagtt 8
|||||||
Sbjct: 7 tacagtt 1
>ptc-miR475b-3p MIMAT0002068 Populus trichocarpa miR475b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagt 7
|||||||
Sbjct: 1 ttacagt 7
>ptc-miR475a-3p MIMAT0002067 Populus trichocarpa miR475a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttacagt 7
|||||||
Sbjct: 1 ttacagt 7
>gga-miR-20b-3p MIMAT0026551 Gallus gallus miR-20b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttacagt 7
|||||||
Sbjct: 7 ttacagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 268
Number of extensions: 233
Number of successful extensions: 195
Number of sequences better than 100.0: 28
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
