BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-34-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6644-3p MIMAT0025745 Gallus gallus miR-6644-3p 14 20
hsa-miR-664b-5p MIMAT0022271 Homo sapiens miR-664b-5p 14 20
rlcv-miR-rL1-34-3p MIMAT0016961 Rhesus lymphocryptovirus miR-rL1... 14 20
rlcv-miR-rL1-18-3p MIMAT0016941 Rhesus lymphocryptovirus miR-rL1... 14 20
eca-miR-8988 MIMAT0034525 Equus caballus miR-8988 12 80
cel-miR-8205-3p MIMAT0032828 Caenorhabditis elegans miR-8205-3p 12 80
stu-miR399o-5p MIMAT0031322 Solanum tuberosum miR399o-5p 12 80
stu-miR399n-5p MIMAT0031320 Solanum tuberosum miR399n-5p 12 80
stu-miR399m-5p MIMAT0031318 Solanum tuberosum miR399m-5p 12 80
stu-miR399l-5p MIMAT0031316 Solanum tuberosum miR399l-5p 12 80
stu-miR399k-5p MIMAT0031314 Solanum tuberosum miR399k-5p 12 80
stu-miR399j-5p MIMAT0031312 Solanum tuberosum miR399j-5p 12 80
stu-miR399i-5p MIMAT0031260 Solanum tuberosum miR399i-5p 12 80
stu-miR399h MIMAT0030971 Solanum tuberosum miR399h 12 80
stu-miR399g-5p MIMAT0030970 Solanum tuberosum miR399g-5p 12 80
stu-miR399f-5p MIMAT0030969 Solanum tuberosum miR399f-5p 12 80
stu-miR399e-5p MIMAT0030968 Solanum tuberosum miR399e-5p 12 80
stu-miR399d-5p MIMAT0030967 Solanum tuberosum miR399d-5p 12 80
stu-miR399c-5p MIMAT0030966 Solanum tuberosum miR399c-5p 12 80
stu-miR399b-5p MIMAT0030965 Solanum tuberosum miR399b-5p 12 80
stu-miR399a-5p MIMAT0030964 Solanum tuberosum miR399a-5p 12 80
mdo-miR-7375-5p MIMAT0028796 Monodelphis domestica miR-7375-5p 12 80
mdo-miR-7260-5p MIMAT0028486 Monodelphis domestica miR-7260-5p 12 80
mmu-miR-6365 MIMAT0025109 Mus musculus miR-6365 12 80
ppy-miR-3943 MIMAT0024363 Pongo pygmaeus miR-3943 12 80
ggo-miR-3943 MIMAT0024210 Gorilla gorilla miR-3943 12 80
ptr-miR-3943 MIMAT0024046 Pan troglodytes miR-3943 12 80
hsa-miR-6069 MIMAT0023694 Homo sapiens miR-6069 12 80
nta-miR6024 MIMAT0023595 Nicotiana tabacum miR6024 12 80
osa-miR5826 MIMAT0023300 Oryza sativa miR5826 12 80
hsa-miR-4662a-5p MIMAT0019731 Homo sapiens miR-4662a-5p 12 80
hsa-miR-4489 MIMAT0019023 Homo sapiens miR-4489 12 80
hsa-miR-3943 MIMAT0018359 Homo sapiens miR-3943 12 80
tca-miR-3838-5p MIMAT0018720 Tribolium castaneum miR-3838-5p 12 80
pab-miR3697 MIMAT0018129 Picea abies miR3697 12 80
hsa-miR-3651 MIMAT0018071 Homo sapiens miR-3651 12 80
cin-miR-4008c-3p MIMAT0016500 Ciona intestinalis miR-4008c-3p 12 80
bmo-miR-3419 MIMAT0015626 Bombyx mori miR-3419 12 80
crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p 12 80
osa-miR1874-5p MIMAT0007827 Oryza sativa miR1874-5p 12 80
cfa-miR-664 MIMAT0006680 Canis familiaris miR-664 12 80
gga-miR-1674 MIMAT0007558 Gallus gallus miR-1674 12 80
gga-miR-1595-3p MIMAT0007459 Gallus gallus miR-1595-3p 12 80
mmu-miR-701-5p MIMAT0003491 Mus musculus miR-701-5p 12 80
>gga-miR-6644-3p MIMAT0025745 Gallus gallus miR-6644-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttagccc 7
|||||||
Sbjct: 8 ttagccc 2
>hsa-miR-664b-5p MIMAT0022271 Homo sapiens miR-664b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttagccc 7
|||||||
Sbjct: 8 ttagccc 2
>rlcv-miR-rL1-34-3p MIMAT0016961 Rhesus lymphocryptovirus
miR-rL1-34-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagccc 7
|||||||
Sbjct: 1 ttagccc 7
>rlcv-miR-rL1-18-3p MIMAT0016941 Rhesus lymphocryptovirus
miR-rL1-18-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagccc 7
|||||||
Sbjct: 1 ttagccc 7
>eca-miR-8988 MIMAT0034525 Equus caballus miR-8988
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>cel-miR-8205-3p MIMAT0032828 Caenorhabditis elegans miR-8205-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttagcc 6
||||||
Sbjct: 1 ttagcc 6
>stu-miR399o-5p MIMAT0031322 Solanum tuberosum miR399o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399n-5p MIMAT0031320 Solanum tuberosum miR399n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399m-5p MIMAT0031318 Solanum tuberosum miR399m-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399l-5p MIMAT0031316 Solanum tuberosum miR399l-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399k-5p MIMAT0031314 Solanum tuberosum miR399k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399j-5p MIMAT0031312 Solanum tuberosum miR399j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399i-5p MIMAT0031260 Solanum tuberosum miR399i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399h MIMAT0030971 Solanum tuberosum miR399h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399g-5p MIMAT0030970 Solanum tuberosum miR399g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399f-5p MIMAT0030969 Solanum tuberosum miR399f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399e-5p MIMAT0030968 Solanum tuberosum miR399e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399d-5p MIMAT0030967 Solanum tuberosum miR399d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399c-5p MIMAT0030966 Solanum tuberosum miR399c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399b-5p MIMAT0030965 Solanum tuberosum miR399b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>stu-miR399a-5p MIMAT0030964 Solanum tuberosum miR399a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>mdo-miR-7375-5p MIMAT0028796 Monodelphis domestica miR-7375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>mdo-miR-7260-5p MIMAT0028486 Monodelphis domestica miR-7260-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttagcc 6
||||||
Sbjct: 8 ttagcc 3
>mmu-miR-6365 MIMAT0025109 Mus musculus miR-6365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttagcc 6
||||||
Sbjct: 1 ttagcc 6
>ppy-miR-3943 MIMAT0024363 Pongo pygmaeus miR-3943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>ggo-miR-3943 MIMAT0024210 Gorilla gorilla miR-3943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>ptr-miR-3943 MIMAT0024046 Pan troglodytes miR-3943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>hsa-miR-6069 MIMAT0023694 Homo sapiens miR-6069
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>nta-miR6024 MIMAT0023595 Nicotiana tabacum miR6024
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttagcc 6
||||||
Sbjct: 3 ttagcc 8
>osa-miR5826 MIMAT0023300 Oryza sativa miR5826
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>hsa-miR-4662a-5p MIMAT0019731 Homo sapiens miR-4662a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttagcc 6
||||||
Sbjct: 1 ttagcc 6
>hsa-miR-4489 MIMAT0019023 Homo sapiens miR-4489
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 8 tagccc 3
>hsa-miR-3943 MIMAT0018359 Homo sapiens miR-3943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>tca-miR-3838-5p MIMAT0018720 Tribolium castaneum miR-3838-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttagcc 6
||||||
Sbjct: 3 ttagcc 8
>pab-miR3697 MIMAT0018129 Picea abies miR3697
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>hsa-miR-3651 MIMAT0018071 Homo sapiens miR-3651
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 3 tagccc 8
>cin-miR-4008c-3p MIMAT0016500 Ciona intestinalis miR-4008c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 8 tagccc 3
>bmo-miR-3419 MIMAT0015626 Bombyx mori miR-3419
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttagcc 6
||||||
Sbjct: 1 ttagcc 6
>crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 8 tagccc 3
>osa-miR1874-5p MIMAT0007827 Oryza sativa miR1874-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 8 tagccc 3
>cfa-miR-664 MIMAT0006680 Canis familiaris miR-664
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 7 tagccc 2
>gga-miR-1674 MIMAT0007558 Gallus gallus miR-1674
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagccc 7
||||||
Sbjct: 6 tagccc 1
>gga-miR-1595-3p MIMAT0007459 Gallus gallus miR-1595-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagccc 7
||||||
Sbjct: 1 tagccc 6
>mmu-miR-701-5p MIMAT0003491 Mus musculus miR-701-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttagcc 6
||||||
Sbjct: 1 ttagcc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 52
Number of extensions: 48
Number of successful extensions: 44
Number of sequences better than 100.0: 44
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 44
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
