BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h12
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H12 MIMAT0014699 Herpes Simplex miR-H12 16 6.9
eca-miR-676 MIMAT0034705 Equus caballus miR-676 14 27
eca-miR-9075 MIMAT0034620 Equus caballus miR-9075 14 27
sma-miR-8422-3p MIMAT0033549 Schistosoma mansoni miR-8422-3p 14 27
prd-miR-7910a-3p MIMAT0030639 Panagrellus redivivus miR-7910a-3p 14 27
ppy-miR-676 MIMAT0024365 Pongo pygmaeus miR-676 14 27
mml-miR-676-3p MIMAT0024325 Macaca mulatta miR-676-3p 14 27
gma-miR5770b MIMAT0023189 Glycine max miR5770b 14 27
gma-miR5770a MIMAT0023167 Glycine max miR5770a 14 27
aca-miR-5433 MIMAT0022054 Anolis carolinensis miR-5433 14 27
hsv2-miR-H11-3p MIMAT0014698 Herpes Simplex miR-H11-3p 14 27
hsv1-miR-H11 MIMAT0014688 Herpes Simplex miR-H11 14 27
ssc-miR-676-3p MIMAT0013943 Sus scrofa miR-676-3p 14 27
>hsv2-miR-H12 MIMAT0014699 Herpes Simplex miR-H12
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaggacg 8
||||||||
Sbjct: 1 ttaggacg 8
>eca-miR-676 MIMAT0034705 Equus caballus miR-676
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taggacg 8
|||||||
Sbjct: 8 taggacg 2
>eca-miR-9075 MIMAT0034620 Equus caballus miR-9075
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaggac 7
|||||||
Sbjct: 1 ttaggac 7
>sma-miR-8422-3p MIMAT0033549 Schistosoma mansoni miR-8422-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaggac 7
|||||||
Sbjct: 1 ttaggac 7
>prd-miR-7910a-3p MIMAT0030639 Panagrellus redivivus
miR-7910a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaggac 7
|||||||
Sbjct: 1 ttaggac 7
>ppy-miR-676 MIMAT0024365 Pongo pygmaeus miR-676
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taggacg 8
|||||||
Sbjct: 8 taggacg 2
>mml-miR-676-3p MIMAT0024325 Macaca mulatta miR-676-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taggacg 8
|||||||
Sbjct: 8 taggacg 2
>gma-miR5770b MIMAT0023189 Glycine max miR5770b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaggac 7
|||||||
Sbjct: 1 ttaggac 7
>gma-miR5770a MIMAT0023167 Glycine max miR5770a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaggac 7
|||||||
Sbjct: 1 ttaggac 7
>aca-miR-5433 MIMAT0022054 Anolis carolinensis miR-5433
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaggac 7
|||||||
Sbjct: 2 ttaggac 8
>hsv2-miR-H11-3p MIMAT0014698 Herpes Simplex miR-H11-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaggac 7
|||||||
Sbjct: 1 ttaggac 7
>hsv1-miR-H11 MIMAT0014688 Herpes Simplex miR-H11
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaggac 7
|||||||
Sbjct: 1 ttaggac 7
>ssc-miR-676-3p MIMAT0013943 Sus scrofa miR-676-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taggacg 8
|||||||
Sbjct: 8 taggacg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 106
Number of extensions: 92
Number of successful extensions: 69
Number of sequences better than 100.0: 13
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
