BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h13
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H13 MIMAT0014700 Herpes Simplex miR-H13 16 6.9
hsa-miR-18b-3p MIMAT0004751 Homo sapiens miR-18b-3p 16 6.9
chi-miR-146b-3p MIMAT0035973 Capra hircus miR-146b-3p 14 27
chi-miR-1296 MIMAT0035938 Capra hircus miR-1296 14 27
efu-miR-146 MIMAT0035020 Eptesicus fuscus miR-146 14 27
cfa-miR-1296 MIMAT0034413 Canis familiaris miR-1296 14 27
ssa-miR-18b-3p MIMAT0032435 Salmo salar miR-18b-3p 14 27
ssc-miR-7139-3p MIMAT0028154 Sus scrofa miR-7139-3p 14 27
mml-miR-1296-5p MIMAT0024328 Macaca mulatta miR-1296-5p 14 27
ggo-miR-1296 MIMAT0024172 Gorilla gorilla miR-1296 14 27
ssc-miR-1296-5p MIMAT0022964 Sus scrofa miR-1296-5p 14 27
ppy-miR-1296 MIMAT0016217 Pongo pygmaeus miR-1296 14 27
hsa-miR-3157-3p MIMAT0019210 Homo sapiens miR-3157-3p 14 27
hsv1-miR-H13 MIMAT0014690 Herpes Simplex miR-H13 14 27
tgu-miR-146b-3p MIMAT0014652 Taeniopygia guttata miR-146b-3p 14 27
hsa-miR-2909 MIMAT0013863 Homo sapiens miR-2909 14 27
eca-miR-146b-3p MIMAT0012892 Equus caballus miR-146b-3p 14 27
eca-miR-1296 MIMAT0012890 Equus caballus miR-1296 14 27
crm-miR-58b-5p MIMAT0011614 Caenorhabditis remanei miR-58b-5p 14 27
crm-miR-58a MIMAT0011545 Caenorhabditis remanei miR-58a 14 27
bta-miR-1296 MIMAT0009964 Bos taurus miR-1296 14 27
lgi-miR-1984 MIMAT0009726 Lottia gigantea miR-1984 14 27
hru-miR-1984 MIMAT0009715 Haliotis rufescens miR-1984 14 27
ptr-miR-1296 MIMAT0008015 Pan troglodytes miR-1296 14 27
osa-miR1870-3p MIMAT0015270 Oryza sativa miR1870-3p 14 27
gga-miR-1659 MIMAT0007540 Gallus gallus miR-1659 14 27
hsa-miR-1296-5p MIMAT0005794 Homo sapiens miR-1296-5p 14 27
dre-miR-18b-3p MIMAT0003397 Danio rerio miR-18b-3p 14 27
mmu-miR-186-3p MIMAT0004540 Mus musculus miR-186-3p 14 27
cel-miR-58a-5p MIMAT0015100 Caenorhabditis elegans miR-58a-5p 14 27
>hsv2-miR-H13 MIMAT0014700 Herpes Simplex miR-H13
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttagggca 8
||||||||
Sbjct: 1 ttagggca 8
>hsa-miR-18b-3p MIMAT0004751 Homo sapiens miR-18b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ttagggca 8
||||||||
Sbjct: 8 ttagggca 1
>chi-miR-146b-3p MIMAT0035973 Capra hircus miR-146b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
>chi-miR-1296 MIMAT0035938 Capra hircus miR-1296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>efu-miR-146 MIMAT0035020 Eptesicus fuscus miR-146
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
>cfa-miR-1296 MIMAT0034413 Canis familiaris miR-1296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>ssa-miR-18b-3p MIMAT0032435 Salmo salar miR-18b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 8 tagggca 2
>ssc-miR-7139-3p MIMAT0028154 Sus scrofa miR-7139-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagggca 8
|||||||
Sbjct: 1 tagggca 7
>mml-miR-1296-5p MIMAT0024328 Macaca mulatta miR-1296-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>ggo-miR-1296 MIMAT0024172 Gorilla gorilla miR-1296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>ssc-miR-1296-5p MIMAT0022964 Sus scrofa miR-1296-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>ppy-miR-1296 MIMAT0016217 Pongo pygmaeus miR-1296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>hsa-miR-3157-3p MIMAT0019210 Homo sapiens miR-3157-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 8 tagggca 2
>hsv1-miR-H13 MIMAT0014690 Herpes Simplex miR-H13
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>tgu-miR-146b-3p MIMAT0014652 Taeniopygia guttata miR-146b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
>hsa-miR-2909 MIMAT0013863 Homo sapiens miR-2909
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 2 ttagggc 8
>eca-miR-146b-3p MIMAT0012892 Equus caballus miR-146b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
>eca-miR-1296 MIMAT0012890 Equus caballus miR-1296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>crm-miR-58b-5p MIMAT0011614 Caenorhabditis remanei miR-58b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
>crm-miR-58a MIMAT0011545 Caenorhabditis remanei miR-58a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
>bta-miR-1296 MIMAT0009964 Bos taurus miR-1296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>lgi-miR-1984 MIMAT0009726 Lottia gigantea miR-1984
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
>hru-miR-1984 MIMAT0009715 Haliotis rufescens miR-1984
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
>ptr-miR-1296 MIMAT0008015 Pan troglodytes miR-1296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>osa-miR1870-3p MIMAT0015270 Oryza sativa miR1870-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 2 ttagggc 8
>gga-miR-1659 MIMAT0007540 Gallus gallus miR-1659
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagggca 8
|||||||
Sbjct: 1 tagggca 7
>hsa-miR-1296-5p MIMAT0005794 Homo sapiens miR-1296-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagggc 7
|||||||
Sbjct: 1 ttagggc 7
>dre-miR-18b-3p MIMAT0003397 Danio rerio miR-18b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 8 tagggca 2
>mmu-miR-186-3p MIMAT0004540 Mus musculus miR-186-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttagggc 7
|||||||
Sbjct: 7 ttagggc 1
>cel-miR-58a-5p MIMAT0015100 Caenorhabditis elegans miR-58a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagggca 8
|||||||
Sbjct: 7 tagggca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 174
Number of extensions: 142
Number of successful extensions: 112
Number of sequences better than 100.0: 30
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 30
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
