BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k10a_ 1_5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142 14 27
cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861 14 27
ppc-miR-8299-5p MIMAT0033115 Pristionchus pacificus miR-8299-5p 14 27
ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142 14 27
ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p 14 27
gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p 14 27
mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360 14 27
cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p 14 27
gma-miR5785 MIMAT0023191 Glycine max miR5785 14 27
hsa-miR-3591-5p MIMAT0019876 Homo sapiens miR-3591-5p 14 27
aly-miR840-5p MIMAT0017625 Arabidopsis lyrata miR840-5p 14 27
tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p 14 27
tgu-miR-338-5p MIMAT0017389 Taeniopygia guttata miR-338-5p 14 27
kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated miR-K... 14 27
>tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 2 tagtgtt 8
>cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagtgt 7
|||||||
Sbjct: 1 ttagtgt 7
>ppc-miR-8299-5p MIMAT0033115 Pristionchus pacificus miR-8299-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 1 tagtgtt 7
>ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 2 tagtgtt 8
>ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 2 tagtgtt 8
>gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagtgtt 8
|||||||
Sbjct: 7 tagtgtt 1
>mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 1 tagtgtt 7
>cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 2 tagtgtt 8
>gma-miR5785 MIMAT0023191 Glycine max miR5785
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 1 tagtgtt 7
>hsa-miR-3591-5p MIMAT0019876 Homo sapiens miR-3591-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagtgt 7
|||||||
Sbjct: 2 ttagtgt 8
>aly-miR840-5p MIMAT0017625 Arabidopsis lyrata miR840-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttagtgt 7
|||||||
Sbjct: 7 ttagtgt 1
>tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 2 tagtgtt 8
>tgu-miR-338-5p MIMAT0017389 Taeniopygia guttata miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagtgtt 8
|||||||
Sbjct: 7 tagtgtt 1
>kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated
miR-K12-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagtgtt 8
|||||||
Sbjct: 1 tagtgtt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 178
Number of extensions: 164
Number of successful extensions: 154
Number of sequences better than 100.0: 14
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
