BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-23-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-23-3p MIMAT0016946 Rhesus lymphocryptovirus miR-rL1... 16 6.9
oha-miR-449c-3p MIMAT0036928 Ophiophagus hannah miR-449c-3p 14 27
ath-miR8183 MIMAT0032782 Arabidopsis thaliana miR8183 14 27
bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p 14 27
bdi-miR7717c-3p MIMAT0030205 Brachypodium distachyon miR7717c-3p 14 27
mml-miR-549b-3p MIMAT0028345 Macaca mulatta miR-549b-3p 14 27
mml-miR-4703-3p MIMAT0028279 Macaca mulatta miR-4703-3p 14 27
ddi-miR-7101 MIMAT0028104 Dictyostelium discoideum miR-7101 14 27
aca-miR-449c-3p MIMAT0022015 Anolis carolinensis miR-449c-3p 14 27
ebv-miR-BART21-3p MIMAT0010131 Epstein Barr miR-BART21-3p 14 27
bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p 14 27
mmu-miR-669o-5p MIMAT0009421 Mus musculus miR-669o-5p 14 27
mmu-miR-669c-5p MIMAT0003479 Mus musculus miR-669c-5p 14 27
>rlcv-miR-rL1-23-3p MIMAT0016946 Rhesus lymphocryptovirus
miR-rL1-23-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttagttgt 8
||||||||
Sbjct: 1 ttagttgt 8
>oha-miR-449c-3p MIMAT0036928 Ophiophagus hannah miR-449c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttagttg 7
|||||||
Sbjct: 8 ttagttg 2
>ath-miR8183 MIMAT0032782 Arabidopsis thaliana miR8183
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagttg 7
|||||||
Sbjct: 2 ttagttg 8
>bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagttgt 8
|||||||
Sbjct: 8 tagttgt 2
>bdi-miR7717c-3p MIMAT0030205 Brachypodium distachyon
miR7717c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagttg 7
|||||||
Sbjct: 1 ttagttg 7
>mml-miR-549b-3p MIMAT0028345 Macaca mulatta miR-549b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagttgt 8
|||||||
Sbjct: 8 tagttgt 2
>mml-miR-4703-3p MIMAT0028279 Macaca mulatta miR-4703-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagttgt 8
|||||||
Sbjct: 2 tagttgt 8
>ddi-miR-7101 MIMAT0028104 Dictyostelium discoideum miR-7101
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttagttg 7
|||||||
Sbjct: 1 ttagttg 7
>aca-miR-449c-3p MIMAT0022015 Anolis carolinensis miR-449c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttagttg 7
|||||||
Sbjct: 8 ttagttg 2
>ebv-miR-BART21-3p MIMAT0010131 Epstein Barr miR-BART21-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagttgt 8
|||||||
Sbjct: 2 tagttgt 8
>bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tagttgt 8
|||||||
Sbjct: 8 tagttgt 2
>mmu-miR-669o-5p MIMAT0009421 Mus musculus miR-669o-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagttgt 8
|||||||
Sbjct: 1 tagttgt 7
>mmu-miR-669c-5p MIMAT0003479 Mus musculus miR-669c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tagttgt 8
|||||||
Sbjct: 2 tagttgt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 110
Number of extensions: 96
Number of successful extensions: 80
Number of sequences better than 100.0: 13
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)