BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvsa-miR-hsur4-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvsa-miR-HSUR4-3p MIMAT0022685 Herpesvirus saimiri miR-HSUR4-3p 14 20
oha-miR-2985b-3p MIMAT0036875 Ophiophagus hannah miR-2985b-3p 12 80
oha-miR-2985a-3p MIMAT0036873 Ophiophagus hannah miR-2985a-3p 12 80
oha-miR-2985a-2-3p MIMAT0036872 Ophiophagus hannah miR-2985a-2-3p 12 80
gra-miR8731 MIMAT0034131 Gossypium raimondii miR8731 12 80
sma-miR-8452-3p MIMAT0033615 Schistosoma mansoni miR-8452-3p 12 80
sma-miR-8450-5p MIMAT0033610 Schistosoma mansoni miR-8450-5p 12 80
oan-miR-2985-3p MIMAT0028957 Ornithorhynchus anatinus miR-2985-3p 12 80
mml-miR-1262-5p MIMAT0027111 Macaca mulatta miR-1262-5p 12 80
hco-miR-5958 MIMAT0023461 Haemonchus contortus miR-5958 12 80
osa-miR5494 MIMAT0022127 Oryza sativa miR5494 12 80
gma-miR5374-5p MIMAT0021615 Glycine max miR5374-5p 12 80
rno-miR-2985 MIMAT0017891 Rattus norvegicus miR-2985 12 80
api-miR-3046 MIMAT0014785 Acyrthosiphon pisum miR-3046 12 80
oan-miR-1366 MIMAT0007030 Ornithorhynchus anatinus miR-1366 12 80
smo-miR1099 MIMAT0005255 Selaginella moellendorffii miR1099 12 80
>hvsa-miR-HSUR4-3p MIMAT0022685 Herpesvirus saimiri miR-HSUR4-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatagc 7
|||||||
Sbjct: 2 ttatagc 8
>oha-miR-2985b-3p MIMAT0036875 Ophiophagus hannah miR-2985b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 3 ttatag 8
>oha-miR-2985a-3p MIMAT0036873 Ophiophagus hannah miR-2985a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 3 ttatag 8
>oha-miR-2985a-2-3p MIMAT0036872 Ophiophagus hannah
miR-2985a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 3 ttatag 8
>gra-miR8731 MIMAT0034131 Gossypium raimondii miR8731
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatag 6
||||||
Sbjct: 6 ttatag 1
>sma-miR-8452-3p MIMAT0033615 Schistosoma mansoni miR-8452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 1 ttatag 6
>sma-miR-8450-5p MIMAT0033610 Schistosoma mansoni miR-8450-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatag 6
||||||
Sbjct: 8 ttatag 3
>oan-miR-2985-3p MIMAT0028957 Ornithorhynchus anatinus
miR-2985-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 3 ttatag 8
>mml-miR-1262-5p MIMAT0027111 Macaca mulatta miR-1262-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatag 6
||||||
Sbjct: 8 ttatag 3
>hco-miR-5958 MIMAT0023461 Haemonchus contortus miR-5958
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagc 7
||||||
Sbjct: 1 tatagc 6
>osa-miR5494 MIMAT0022127 Oryza sativa miR5494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 1 ttatag 6
>gma-miR5374-5p MIMAT0021615 Glycine max miR5374-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 1 ttatag 6
>rno-miR-2985 MIMAT0017891 Rattus norvegicus miR-2985
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 3 ttatag 8
>api-miR-3046 MIMAT0014785 Acyrthosiphon pisum miR-3046
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatag 6
||||||
Sbjct: 1 ttatag 6
>oan-miR-1366 MIMAT0007030 Ornithorhynchus anatinus miR-1366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagc 7
||||||
Sbjct: 7 tatagc 2
>smo-miR1099 MIMAT0005255 Selaginella moellendorffii miR1099
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagc 7
||||||
Sbjct: 1 tatagc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 22
Number of extensions: 21
Number of successful extensions: 16
Number of sequences better than 100.0: 16
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)