BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hvsa-miR-hsur4-3p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hvsa-miR-HSUR4-3p MIMAT0022685 Herpesvirus saimiri miR-HSUR4-3p        14      20
oha-miR-2985b-3p MIMAT0036875 Ophiophagus hannah miR-2985b-3p          12      80
oha-miR-2985a-3p MIMAT0036873 Ophiophagus hannah miR-2985a-3p          12      80
oha-miR-2985a-2-3p MIMAT0036872 Ophiophagus hannah miR-2985a-2-3p      12      80
gra-miR8731 MIMAT0034131 Gossypium raimondii miR8731                   12      80
sma-miR-8452-3p MIMAT0033615 Schistosoma mansoni miR-8452-3p           12      80
sma-miR-8450-5p MIMAT0033610 Schistosoma mansoni miR-8450-5p           12      80
oan-miR-2985-3p MIMAT0028957 Ornithorhynchus anatinus miR-2985-3p      12      80
mml-miR-1262-5p MIMAT0027111 Macaca mulatta miR-1262-5p                12      80
hco-miR-5958 MIMAT0023461 Haemonchus contortus miR-5958                12      80
osa-miR5494 MIMAT0022127 Oryza sativa miR5494                          12      80
gma-miR5374-5p MIMAT0021615 Glycine max miR5374-5p                     12      80
rno-miR-2985 MIMAT0017891 Rattus norvegicus miR-2985                   12      80
api-miR-3046 MIMAT0014785 Acyrthosiphon pisum miR-3046                 12      80
oan-miR-1366 MIMAT0007030 Ornithorhynchus anatinus miR-1366            12      80
smo-miR1099 MIMAT0005255 Selaginella moellendorffii miR1099            12      80
>hvsa-miR-HSUR4-3p MIMAT0022685 Herpesvirus saimiri miR-HSUR4-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttatagc 7
         |||||||
Sbjct: 2 ttatagc 8
>oha-miR-2985b-3p MIMAT0036875 Ophiophagus hannah miR-2985b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 3 ttatag 8
>oha-miR-2985a-3p MIMAT0036873 Ophiophagus hannah miR-2985a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 3 ttatag 8
>oha-miR-2985a-2-3p MIMAT0036872 Ophiophagus hannah
         miR-2985a-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 3 ttatag 8
>gra-miR8731 MIMAT0034131 Gossypium raimondii miR8731
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 6 ttatag 1
>sma-miR-8452-3p MIMAT0033615 Schistosoma mansoni miR-8452-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 1 ttatag 6
>sma-miR-8450-5p MIMAT0033610 Schistosoma mansoni miR-8450-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 8 ttatag 3
>oan-miR-2985-3p MIMAT0028957 Ornithorhynchus anatinus
         miR-2985-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 3 ttatag 8
>mml-miR-1262-5p MIMAT0027111 Macaca mulatta miR-1262-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 8 ttatag 3
>hco-miR-5958 MIMAT0023461 Haemonchus contortus miR-5958
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagc 7
         ||||||
Sbjct: 1 tatagc 6
>osa-miR5494 MIMAT0022127 Oryza sativa miR5494
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 1 ttatag 6
>gma-miR5374-5p MIMAT0021615 Glycine max miR5374-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 1 ttatag 6
>rno-miR-2985 MIMAT0017891 Rattus norvegicus miR-2985
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 3 ttatag 8
>api-miR-3046 MIMAT0014785 Acyrthosiphon pisum miR-3046
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttatag 6
         ||||||
Sbjct: 1 ttatag 6
>oan-miR-1366 MIMAT0007030 Ornithorhynchus anatinus miR-1366
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagc 7
         ||||||
Sbjct: 7 tatagc 2
>smo-miR1099 MIMAT0005255 Selaginella moellendorffii miR1099
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagc 7
         ||||||
Sbjct: 1 tatagc 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 22
Number of extensions: 21
Number of successful extensions: 16
Number of sequences better than 100.0: 16
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)