BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r43.1-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-361-5p MIMAT0036517 Tupaia chinensis miR-361-5p 14 27
chi-miR-374b-3p MIMAT0036183 Capra hircus miR-374b-3p 14 27
chi-miR-374a-3p MIMAT0036181 Capra hircus miR-374a-3p 14 27
chi-miR-361-5p MIMAT0036171 Capra hircus miR-361-5p 14 27
efu-miR-361 MIMAT0035058 Eptesicus fuscus miR-361 14 27
mmu-miR-6537-3p MIMAT0025582 Mus musculus miR-6537-3p 14 27
ggo-miR-374a MIMAT0024169 Gorilla gorilla miR-374a 14 27
ggo-miR-361 MIMAT0024136 Gorilla gorilla miR-361 14 27
cgr-miR-374-3p MIMAT0023940 Cricetulus griseus miR-374-3p 14 27
cgr-miR-361 MIMAT0023933 Cricetulus griseus miR-361 14 27
ppy-miR-361-5p MIMAT0015848 Pongo pygmaeus miR-361-5p 14 27
hsa-miR-3161 MIMAT0015035 Homo sapiens miR-3161 14 27
ssc-miR-361-5p MIMAT0013933 Sus scrofa miR-361-5p 14 27
ssc-miR-374b-3p MIMAT0017378 Sus scrofa miR-374b-3p 14 27
ssc-miR-374a-3p MIMAT0013914 Sus scrofa miR-374a-3p 14 27
eca-miR-361-5p MIMAT0013208 Equus caballus miR-361-5p 14 27
bta-miR-2291 MIMAT0011799 Bos taurus miR-2291 14 27
osa-miR2095-5p MIMAT0010054 Oryza sativa miR2095-5p 14 27
tca-miR-2c-5p MIMAT0019093 Tribolium castaneum miR-2c-5p 14 27
cfa-miR-361 MIMAT0006751 Canis familiaris miR-361 14 27
mml-miR-374a-3p MIMAT0026859 Macaca mulatta miR-374a-3p 14 27
mml-miR-361-5p MIMAT0006286 Macaca mulatta miR-361-5p 14 27
bta-miR-361 MIMAT0003830 Bos taurus miR-361 14 27
rno-miR-361-5p MIMAT0003117 Rattus norvegicus miR-361-5p 14 27
hsa-miR-374a-3p MIMAT0004688 Homo sapiens miR-374a-3p 14 27
mmu-miR-361-5p MIMAT0000704 Mus musculus miR-361-5p 14 27
hsa-miR-361-5p MIMAT0000703 Homo sapiens miR-361-5p 14 27
>tch-miR-361-5p MIMAT0036517 Tupaia chinensis miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>chi-miR-374b-3p MIMAT0036183 Capra hircus miR-374b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>chi-miR-374a-3p MIMAT0036181 Capra hircus miR-374a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>chi-miR-361-5p MIMAT0036171 Capra hircus miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>efu-miR-361 MIMAT0035058 Eptesicus fuscus miR-361
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>mmu-miR-6537-3p MIMAT0025582 Mus musculus miR-6537-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>ggo-miR-374a MIMAT0024169 Gorilla gorilla miR-374a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>ggo-miR-361 MIMAT0024136 Gorilla gorilla miR-361
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>cgr-miR-374-3p MIMAT0023940 Cricetulus griseus miR-374-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>cgr-miR-361 MIMAT0023933 Cricetulus griseus miR-361
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>ppy-miR-361-5p MIMAT0015848 Pongo pygmaeus miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>hsa-miR-3161 MIMAT0015035 Homo sapiens miR-3161
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttatcag 7
|||||||
Sbjct: 7 ttatcag 1
>ssc-miR-361-5p MIMAT0013933 Sus scrofa miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>ssc-miR-374b-3p MIMAT0017378 Sus scrofa miR-374b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>ssc-miR-374a-3p MIMAT0013914 Sus scrofa miR-374a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>eca-miR-361-5p MIMAT0013208 Equus caballus miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>bta-miR-2291 MIMAT0011799 Bos taurus miR-2291
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tatcagc 8
|||||||
Sbjct: 7 tatcagc 1
>osa-miR2095-5p MIMAT0010054 Oryza sativa miR2095-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttatcag 7
|||||||
Sbjct: 7 ttatcag 1
>tca-miR-2c-5p MIMAT0019093 Tribolium castaneum miR-2c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>cfa-miR-361 MIMAT0006751 Canis familiaris miR-361
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>mml-miR-374a-3p MIMAT0026859 Macaca mulatta miR-374a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>mml-miR-361-5p MIMAT0006286 Macaca mulatta miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>bta-miR-361 MIMAT0003830 Bos taurus miR-361
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>rno-miR-361-5p MIMAT0003117 Rattus norvegicus miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>hsa-miR-374a-3p MIMAT0004688 Homo sapiens miR-374a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 2 ttatcag 8
>mmu-miR-361-5p MIMAT0000704 Mus musculus miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
>hsa-miR-361-5p MIMAT0000703 Homo sapiens miR-361-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatcag 7
|||||||
Sbjct: 1 ttatcag 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 143
Number of extensions: 116
Number of successful extensions: 94
Number of sequences better than 100.0: 27
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 27
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
