BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh183-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ame-miR-9893 MIMAT0037298 Apis mellifera miR-9893 14 20
tae-miR9675-3p MIMAT0035798 Triticum aestivum miR9675-3p 14 20
ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p 14 20
cin-miR-5603-5p MIMAT0022331 Ciona intestinalis miR-5603-5p 14 20
tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p 14 20
ppt-miR902i-5p MIMAT0005081 Physcomitrella patens miR902i-5p 14 20
ppt-miR902h-5p MIMAT0005079 Physcomitrella patens miR902h-5p 14 20
ata-miR9863b-5p MIMAT0037236 Aegilops tauschii miR9863b-5p 12 80
ata-miR9863a-5p MIMAT0037104 Aegilops tauschii miR9863a-5p 12 80
tch-miR-376b-3p MIMAT0036609 Tupaia chinensis miR-376b-3p 12 80
tch-miR-376a-3p MIMAT0036537 Tupaia chinensis miR-376a-3p 12 80
tch-miR-539-3p MIMAT0036505 Tupaia chinensis miR-539-3p 12 80
chi-miR-376d MIMAT0036189 Capra hircus miR-376d 12 80
chi-miR-376b-3p MIMAT0036186 Capra hircus miR-376b-3p 12 80
chi-miR-154b-3p MIMAT0035987 Capra hircus miR-154b-3p 12 80
dvi-miR-970-3p MIMAT0035591 Drosophila virilis miR-970-3p 12 80
bdi-miR9485 MIMAT0035492 Brachypodium distachyon miR9485 12 80
eca-miR-9132 MIMAT0034683 Equus caballus miR-9132 12 80
cfa-miR-507a MIMAT0034432 Canis familiaris miR-507a 12 80
cfa-miR-8831 MIMAT0034324 Canis familiaris miR-8831 12 80
gra-miR166c MIMAT0034156 Gossypium raimondii miR166c 12 80
ppc-miR-8354-5p MIMAT0033268 Pristionchus pacificus miR-8354-5p 12 80
ppc-miR-8282a-3p MIMAT0033068 Pristionchus pacificus miR-8282a-3p 12 80
stu-miR4376-3p MIMAT0031275 Solanum tuberosum miR4376-3p 12 80
stu-miR8046-5p MIMAT0030961 Solanum tuberosum miR8046-5p 12 80
stu-miR8040-5p MIMAT0031220 Solanum tuberosum miR8040-5p 12 80
stu-miR8028-3p MIMAT0030932 Solanum tuberosum miR8028-3p 12 80
ptc-miR7820 MIMAT0030380 Populus trichocarpa miR7820 12 80
hme-miR-970 MIMAT0024997 Heliconius melpomene miR-970 12 80
nta-miR6145b MIMAT0024753 Nicotiana tabacum miR6145b 12 80
mse-miR-970 MIMAT0024453 Manduca sexta miR-970 12 80
ggo-miR-376b MIMAT0024193 Gorilla gorilla miR-376b 12 80
ggo-miR-376a MIMAT0024159 Gorilla gorilla miR-376a 12 80
ath-miR5633 MIMAT0022393 Arabidopsis thaliana miR5633 12 80
ath-miR5026 MIMAT0020532 Arabidopsis thaliana miR5026 12 80
hsa-miR-5007-3p MIMAT0021036 Homo sapiens miR-5007-3p 12 80
oar-miR-487a-3p MIMAT0019305 Ovis aries miR-487a-3p 12 80
oar-miR-376a-3p MIMAT0019287 Ovis aries miR-376a-3p 12 80
oar-miR-376b-3p MIMAT0019285 Ovis aries miR-376b-3p 12 80
oar-miR-376d MIMAT0019281 Ovis aries miR-376d 12 80
tca-miR-3805b-3p MIMAT0018663 Tribolium castaneum miR-3805b-3p 12 80
tca-miR-3815-3p MIMAT0018655 Tribolium castaneum miR-3815-3p 12 80
ame-miR-3798 MIMAT0018584 Apis mellifera miR-3798 12 80
cin-miR-4054-5p MIMAT0016597 Ciona intestinalis miR-4054-5p 12 80
ppy-miR-376b MIMAT0015865 Pongo pygmaeus miR-376b 12 80
ppy-miR-376a MIMAT0015864 Pongo pygmaeus miR-376a 12 80
ssc-miR-376a-3p MIMAT0015716 Sus scrofa miR-376a-3p 12 80
bmo-miR-3276 MIMAT0015461 Bombyx mori miR-3276 12 80
cqu-miR-970 MIMAT0014378 Culex quinquefasciatus miR-970 12 80
aae-miR-970 MIMAT0014292 Aedes aegypti miR-970 12 80
eca-miR-376b MIMAT0013144 Equus caballus miR-376b 12 80
eca-miR-376a MIMAT0013143 Equus caballus miR-376a 12 80
bmo-miR-2841 MIMAT0013758 Bombyx mori miR-2841 12 80
dsi-miR-970-3p MIMAT0012488 Drosophila simulans miR-970-3p 12 80
dps-miR-970-3p MIMAT0012222 Drosophila pseudoobscura miR-970-3p 12 80
bmo-miR-970-3p MIMAT0010125 Bombyx mori miR-970-3p 12 80
aga-miR-970 MIMAT0010105 Anopheles gambiae miR-970 12 80
tca-miR-970-3p MIMAT0010092 Tribolium castaneum miR-970-3p 12 80
ppt-miR2077 MIMAT0010014 Physcomitrella patens miR2077 12 80
bta-miR-376a MIMAT0009946 Bos taurus miR-376a 12 80
bta-miR-376d MIMAT0010199 Bos taurus miR-376d 12 80
bta-miR-376b MIMAT0009945 Bos taurus miR-376b 12 80
cfa-miR-376b MIMAT0009887 Canis familiaris miR-376b 12 80
ptr-miR-376b MIMAT0008127 Pan troglodytes miR-376b 12 80
ptr-miR-376a MIMAT0008126 Pan troglodytes miR-376a 12 80
cfa-miR-376a MIMAT0006722 Canis familiaris miR-376a 12 80
mml-miR-376b-3p MIMAT0006304 Macaca mulatta miR-376b-3p 12 80
mml-miR-376a-3p MIMAT0006303 Macaca mulatta miR-376a-3p 12 80
gga-miR-1725 MIMAT0007624 Gallus gallus miR-1725 12 80
ppt-miR902g-5p MIMAT0005077 Physcomitrella patens miR902g-5p 12 80
ppt-miR902f-5p MIMAT0005075 Physcomitrella patens miR902f-5p 12 80
ppt-miR902e-5p MIMAT0005073 Physcomitrella patens miR902e-5p 12 80
ppt-miR902d-5p MIMAT0005071 Physcomitrella patens miR902d-5p 12 80
ppt-miR902c-5p MIMAT0005069 Physcomitrella patens miR902c-5p 12 80
dme-miR-970-3p MIMAT0005486 Drosophila melanogaster miR-970-3p 12 80
ppt-miR902b-5p MIMAT0004963 Physcomitrella patens miR902b-5p 12 80
ppt-miR902a-5p MIMAT0004962 Physcomitrella patens miR902a-5p 12 80
osa-miR810a MIMAT0004045 Oryza sativa miR810a 12 80
sme-miR-277c-5p MIMAT0012120 Schmidtea mediterranea miR-277c-5p 12 80
rno-miR-376b-3p MIMAT0003196 Rattus norvegicus miR-376b-3p 12 80
hsa-miR-539-3p MIMAT0022705 Homo sapiens miR-539-3p 12 80
hsa-miR-376b-3p MIMAT0002172 Homo sapiens miR-376b-3p 12 80
hcmv-miR-US5-2-3p MIMAT0001580 Human cytomegalovirus miR-US5-2-3p 12 80
ath-miR419 MIMAT0001327 Arabidopsis thaliana miR419 12 80
mmu-miR-376b-3p MIMAT0001092 Mus musculus miR-376b-3p 12 80
hsa-miR-376a-3p MIMAT0000729 Homo sapiens miR-376a-3p 12 80
>ame-miR-9893 MIMAT0037298 Apis mellifera miR-9893
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 1 ttatgat 7
>tae-miR9675-3p MIMAT0035798 Triticum aestivum miR9675-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 2 ttatgat 8
>ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 2 ttatgat 8
>cin-miR-5603-5p MIMAT0022331 Ciona intestinalis miR-5603-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 1 ttatgat 7
>tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttatgat 7
|||||||
Sbjct: 7 ttatgat 1
>ppt-miR902i-5p MIMAT0005081 Physcomitrella patens miR902i-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 1 ttatgat 7
>ppt-miR902h-5p MIMAT0005079 Physcomitrella patens miR902h-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 1 ttatgat 7
>ata-miR9863b-5p MIMAT0037236 Aegilops tauschii miR9863b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatga 6
||||||
Sbjct: 3 ttatga 8
>ata-miR9863a-5p MIMAT0037104 Aegilops tauschii miR9863a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatga 6
||||||
Sbjct: 3 ttatga 8
>tch-miR-376b-3p MIMAT0036609 Tupaia chinensis miR-376b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>tch-miR-376a-3p MIMAT0036537 Tupaia chinensis miR-376a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>tch-miR-539-3p MIMAT0036505 Tupaia chinensis miR-539-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>chi-miR-376d MIMAT0036189 Capra hircus miR-376d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>chi-miR-376b-3p MIMAT0036186 Capra hircus miR-376b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>chi-miR-154b-3p MIMAT0035987 Capra hircus miR-154b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>dvi-miR-970-3p MIMAT0035591 Drosophila virilis miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>bdi-miR9485 MIMAT0035492 Brachypodium distachyon miR9485
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatga 6
||||||
Sbjct: 1 ttatga 6
>eca-miR-9132 MIMAT0034683 Equus caballus miR-9132
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>cfa-miR-507a MIMAT0034432 Canis familiaris miR-507a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>cfa-miR-8831 MIMAT0034324 Canis familiaris miR-8831
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>gra-miR166c MIMAT0034156 Gossypium raimondii miR166c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 3 tatgat 8
>ppc-miR-8354-5p MIMAT0033268 Pristionchus pacificus miR-8354-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ppc-miR-8282a-3p MIMAT0033068 Pristionchus pacificus
miR-8282a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>stu-miR4376-3p MIMAT0031275 Solanum tuberosum miR4376-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 8 tatgat 3
>stu-miR8046-5p MIMAT0030961 Solanum tuberosum miR8046-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>stu-miR8040-5p MIMAT0031220 Solanum tuberosum miR8040-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>stu-miR8028-3p MIMAT0030932 Solanum tuberosum miR8028-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 8 ttatga 3
>ptc-miR7820 MIMAT0030380 Populus trichocarpa miR7820
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>hme-miR-970 MIMAT0024997 Heliconius melpomene miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>nta-miR6145b MIMAT0024753 Nicotiana tabacum miR6145b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 8 tatgat 3
>mse-miR-970 MIMAT0024453 Manduca sexta miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>ggo-miR-376b MIMAT0024193 Gorilla gorilla miR-376b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>ggo-miR-376a MIMAT0024159 Gorilla gorilla miR-376a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>ath-miR5633 MIMAT0022393 Arabidopsis thaliana miR5633
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ath-miR5026 MIMAT0020532 Arabidopsis thaliana miR5026
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 8 ttatga 3
>hsa-miR-5007-3p MIMAT0021036 Homo sapiens miR-5007-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>oar-miR-487a-3p MIMAT0019305 Ovis aries miR-487a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>oar-miR-376a-3p MIMAT0019287 Ovis aries miR-376a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>oar-miR-376b-3p MIMAT0019285 Ovis aries miR-376b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>oar-miR-376d MIMAT0019281 Ovis aries miR-376d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>tca-miR-3805b-3p MIMAT0018663 Tribolium castaneum miR-3805b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>tca-miR-3815-3p MIMAT0018655 Tribolium castaneum miR-3815-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatga 6
||||||
Sbjct: 1 ttatga 6
>ame-miR-3798 MIMAT0018584 Apis mellifera miR-3798
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>cin-miR-4054-5p MIMAT0016597 Ciona intestinalis miR-4054-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ppy-miR-376b MIMAT0015865 Pongo pygmaeus miR-376b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>ppy-miR-376a MIMAT0015864 Pongo pygmaeus miR-376a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>ssc-miR-376a-3p MIMAT0015716 Sus scrofa miR-376a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>bmo-miR-3276 MIMAT0015461 Bombyx mori miR-3276
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>cqu-miR-970 MIMAT0014378 Culex quinquefasciatus miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>aae-miR-970 MIMAT0014292 Aedes aegypti miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>eca-miR-376b MIMAT0013144 Equus caballus miR-376b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>eca-miR-376a MIMAT0013143 Equus caballus miR-376a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>bmo-miR-2841 MIMAT0013758 Bombyx mori miR-2841
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>dsi-miR-970-3p MIMAT0012488 Drosophila simulans miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>dps-miR-970-3p MIMAT0012222 Drosophila pseudoobscura miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>bmo-miR-970-3p MIMAT0010125 Bombyx mori miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>aga-miR-970 MIMAT0010105 Anopheles gambiae miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>tca-miR-970-3p MIMAT0010092 Tribolium castaneum miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>ppt-miR2077 MIMAT0010014 Physcomitrella patens miR2077
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>bta-miR-376a MIMAT0009946 Bos taurus miR-376a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>bta-miR-376d MIMAT0010199 Bos taurus miR-376d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>bta-miR-376b MIMAT0009945 Bos taurus miR-376b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>cfa-miR-376b MIMAT0009887 Canis familiaris miR-376b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>ptr-miR-376b MIMAT0008127 Pan troglodytes miR-376b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>ptr-miR-376a MIMAT0008126 Pan troglodytes miR-376a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>cfa-miR-376a MIMAT0006722 Canis familiaris miR-376a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>mml-miR-376b-3p MIMAT0006304 Macaca mulatta miR-376b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>mml-miR-376a-3p MIMAT0006303 Macaca mulatta miR-376a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>gga-miR-1725 MIMAT0007624 Gallus gallus miR-1725
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ppt-miR902g-5p MIMAT0005077 Physcomitrella patens miR902g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ppt-miR902f-5p MIMAT0005075 Physcomitrella patens miR902f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ppt-miR902e-5p MIMAT0005073 Physcomitrella patens miR902e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ppt-miR902d-5p MIMAT0005071 Physcomitrella patens miR902d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ppt-miR902c-5p MIMAT0005069 Physcomitrella patens miR902c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>dme-miR-970-3p MIMAT0005486 Drosophila melanogaster miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>ppt-miR902b-5p MIMAT0004963 Physcomitrella patens miR902b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ppt-miR902a-5p MIMAT0004962 Physcomitrella patens miR902a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>osa-miR810a MIMAT0004045 Oryza sativa miR810a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttatga 6
||||||
Sbjct: 6 ttatga 1
>sme-miR-277c-5p MIMAT0012120 Schmidtea mediterranea miR-277c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>rno-miR-376b-3p MIMAT0003196 Rattus norvegicus miR-376b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>hsa-miR-539-3p MIMAT0022705 Homo sapiens miR-539-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>hsa-miR-376b-3p MIMAT0002172 Homo sapiens miR-376b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>hcmv-miR-US5-2-3p MIMAT0001580 Human cytomegalovirus
miR-US5-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatgat 7
||||||
Sbjct: 1 tatgat 6
>ath-miR419 MIMAT0001327 Arabidopsis thaliana miR419
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttatga 6
||||||
Sbjct: 1 ttatga 6
>mmu-miR-376b-3p MIMAT0001092 Mus musculus miR-376b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
>hsa-miR-376a-3p MIMAT0000729 Homo sapiens miR-376a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatgat 7
||||||
Sbjct: 6 tatgat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 125
Number of extensions: 118
Number of successful extensions: 86
Number of sequences better than 100.0: 86
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 86
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
