BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us5-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ame-miR-9893 MIMAT0037298 Apis mellifera miR-9893 14 27
tae-miR9675-3p MIMAT0035798 Triticum aestivum miR9675-3p 14 27
ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p 14 27
ppc-miR-8282a-3p MIMAT0033068 Pristionchus pacificus miR-8282a-3p 14 27
nta-miR6145b MIMAT0024753 Nicotiana tabacum miR6145b 14 27
cin-miR-5603-5p MIMAT0022331 Ciona intestinalis miR-5603-5p 14 27
tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p 14 27
gga-miR-1725 MIMAT0007624 Gallus gallus miR-1725 14 27
oan-miR-1419f-3p MIMAT0007321 Ornithorhynchus anatinus miR-1419f-3p 14 27
ppt-miR902i-5p MIMAT0005081 Physcomitrella patens miR902i-5p 14 27
ppt-miR902h-5p MIMAT0005079 Physcomitrella patens miR902h-5p 14 27
hcmv-miR-US5-2-3p MIMAT0001580 Human cytomegalovirus miR-US5-2-3p 14 27
>ame-miR-9893 MIMAT0037298 Apis mellifera miR-9893
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 1 ttatgat 7
>tae-miR9675-3p MIMAT0035798 Triticum aestivum miR9675-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 2 ttatgat 8
>ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 2 ttatgat 8
>ppc-miR-8282a-3p MIMAT0033068 Pristionchus pacificus
miR-8282a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tatgata 8
|||||||
Sbjct: 1 tatgata 7
>nta-miR6145b MIMAT0024753 Nicotiana tabacum miR6145b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tatgata 8
|||||||
Sbjct: 8 tatgata 2
>cin-miR-5603-5p MIMAT0022331 Ciona intestinalis miR-5603-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 1 ttatgat 7
>tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttatgat 7
|||||||
Sbjct: 7 ttatgat 1
>gga-miR-1725 MIMAT0007624 Gallus gallus miR-1725
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tatgata 8
|||||||
Sbjct: 1 tatgata 7
>oan-miR-1419f-3p MIMAT0007321 Ornithorhynchus anatinus
miR-1419f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tatgata 8
|||||||
Sbjct: 2 tatgata 8
>ppt-miR902i-5p MIMAT0005081 Physcomitrella patens miR902i-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 1 ttatgat 7
>ppt-miR902h-5p MIMAT0005079 Physcomitrella patens miR902h-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttatgat 7
|||||||
Sbjct: 1 ttatgat 7
>hcmv-miR-US5-2-3p MIMAT0001580 Human cytomegalovirus
miR-US5-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tatgata 8
|||||||
Sbjct: 1 tatgata 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 145
Number of extensions: 133
Number of successful extensions: 101
Number of sequences better than 100.0: 12
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
