BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h16-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
amg-miR2086 MIMAT0022681 Acacia mangium miR2086 16 6.9
aau-miR2086 MIMAT0022676 Acacia auriculiformis miR2086 16 6.9
hvt-miR-H16-5p MIMAT0012870 Herpesvirus of miR-H16-5p 16 6.9
mtr-miR2086-3p MIMAT0010027 Medicago truncatula miR2086-3p 16 6.9
rno-miR-1297 MIMAT0035723 Rattus norvegicus miR-1297 14 27
dvi-miR-9550-5p MIMAT0035640 Drosophila virilis miR-9550-5p 14 27
sma-miR-8428-3p MIMAT0033561 Schistosoma mansoni miR-8428-3p 14 27
mdo-miR-7257-5p MIMAT0028480 Monodelphis domestica miR-7257-5p 14 27
cin-miR-5597-5p MIMAT0022317 Ciona intestinalis miR-5597-5p 14 27
dya-miR-288 MIMAT0009094 Drosophila yakuba miR-288 14 27
dwi-miR-288 MIMAT0009050 Drosophila willistoni miR-288 14 27
dvi-miR-288 MIMAT0008952 Drosophila virilis miR-288 14 27
dsi-miR-288 MIMAT0008897 Drosophila simulans miR-288 14 27
dse-miR-288 MIMAT0008806 Drosophila sechellia miR-288 14 27
dpe-miR-288 MIMAT0008753 Drosophila persimilis miR-288 14 27
dmo-miR-288 MIMAT0008675 Drosophila mojavensis miR-288 14 27
dgr-miR-288 MIMAT0008600 Drosophila grimshawi miR-288 14 27
der-miR-288 MIMAT0008551 Drosophila erecta miR-288 14 27
dan-miR-288 MIMAT0008406 Drosophila ananassae miR-288 14 27
ath-miR868-5p MIMAT0020355 Arabidopsis thaliana miR868-5p 14 27
dps-miR-288 MIMAT0001252 Drosophila pseudoobscura miR-288 14 27
dme-miR-288-3p MIMAT0000363 Drosophila melanogaster miR-288-3p 14 27
>amg-miR2086 MIMAT0022681 Acacia mangium miR2086
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ttcatgtc 8
||||||||
Sbjct: 8 ttcatgtc 1
>aau-miR2086 MIMAT0022676 Acacia auriculiformis miR2086
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ttcatgtc 8
||||||||
Sbjct: 8 ttcatgtc 1
>hvt-miR-H16-5p MIMAT0012870 Herpesvirus of miR-H16-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttcatgtc 8
||||||||
Sbjct: 1 ttcatgtc 8
>mtr-miR2086-3p MIMAT0010027 Medicago truncatula miR2086-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ttcatgtc 8
||||||||
Sbjct: 8 ttcatgtc 1
>rno-miR-1297 MIMAT0035723 Rattus norvegicus miR-1297
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dvi-miR-9550-5p MIMAT0035640 Drosophila virilis miR-9550-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 1 ttcatgt 7
>sma-miR-8428-3p MIMAT0033561 Schistosoma mansoni miR-8428-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>mdo-miR-7257-5p MIMAT0028480 Monodelphis domestica miR-7257-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttcatgt 7
|||||||
Sbjct: 7 ttcatgt 1
>cin-miR-5597-5p MIMAT0022317 Ciona intestinalis miR-5597-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcatgtc 8
|||||||
Sbjct: 8 tcatgtc 2
>dya-miR-288 MIMAT0009094 Drosophila yakuba miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dwi-miR-288 MIMAT0009050 Drosophila willistoni miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dvi-miR-288 MIMAT0008952 Drosophila virilis miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dsi-miR-288 MIMAT0008897 Drosophila simulans miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dse-miR-288 MIMAT0008806 Drosophila sechellia miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dpe-miR-288 MIMAT0008753 Drosophila persimilis miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dmo-miR-288 MIMAT0008675 Drosophila mojavensis miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dgr-miR-288 MIMAT0008600 Drosophila grimshawi miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>der-miR-288 MIMAT0008551 Drosophila erecta miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dan-miR-288 MIMAT0008406 Drosophila ananassae miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>ath-miR868-5p MIMAT0020355 Arabidopsis thaliana miR868-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcatgtc 8
|||||||
Sbjct: 1 tcatgtc 7
>dps-miR-288 MIMAT0001252 Drosophila pseudoobscura miR-288
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
>dme-miR-288-3p MIMAT0000363 Drosophila melanogaster miR-288-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcatgt 7
|||||||
Sbjct: 2 ttcatgt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 115
Number of extensions: 89
Number of successful extensions: 83
Number of sequences better than 100.0: 22
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
