BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-6084 MIMAT0023709 Homo sapiens miR-6084 14 20
sha-miR-1549 MIMAT0022824 Sarcophilus harrisii miR-1549 14 20
dme-miR-4947-5p MIMAT0020157 Drosophila melanogaster miR-4947-5p 14 20
ptr-miR-718 MIMAT0012821 Pan troglodytes miR-718 14 20
hsa-miR-718 MIMAT0012735 Homo sapiens miR-718 14 20
cfa-miR-718 MIMAT0009939 Canis familiaris miR-718 14 20
mdo-miR-1549-3p MIMAT0006149 Monodelphis domestica miR-1549-3p 14 20
mmu-miR-718 MIMAT0003514 Mus musculus miR-718 14 20
ssc-miR-9824-5p MIMAT0037042 Sus scrofa miR-9824-5p 12 80
cel-miR-8208-5p MIMAT0032833 Caenorhabditis elegans miR-8208-5p 12 80
mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112 12 80
bdi-miR7719-5p MIMAT0030160 Brachypodium distachyon miR7719-5p 12 80
osa-miR7693-5p MIMAT0029957 Oryza sativa miR7693-5p 12 80
gga-miR-7458-5p MIMAT0029070 Gallus gallus miR-7458-5p 12 80
oan-miR-7434-5p MIMAT0029018 Ornithorhynchus anatinus miR-7434-5p 12 80
ssc-miR-7134-3p MIMAT0028144 Sus scrofa miR-7134-3p 12 80
bma-miR-5869 MIMAT0026368 Brugia malayi miR-5869 12 80
hsa-miR-6850-5p MIMAT0027600 Homo sapiens miR-6850-5p 12 80
hsa-miR-6125 MIMAT0024598 Homo sapiens miR-6125 12 80
osa-miR5832 MIMAT0023307 Oryza sativa miR5832 12 80
dme-miR-4940-5p MIMAT0020146 Drosophila melanogaster miR-4940-5p 12 80
hsa-miR-4730 MIMAT0019852 Homo sapiens miR-4730 12 80
pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p 12 80
ame-miR-3784 MIMAT0018563 Apis mellifera miR-3784 12 80
ame-miR-3775 MIMAT0018552 Apis mellifera miR-3775 12 80
ppy-miR-937 MIMAT0016137 Pongo pygmaeus miR-937 12 80
ppy-miR-658 MIMAT0016091 Pongo pygmaeus miR-658 12 80
esi-miR3452-3p MIMAT0017788 Ectocarpus siliculosus miR3452-3p 12 80
esi-miR3453-3p MIMAT0017780 Ectocarpus siliculosus miR3453-3p 12 80
zma-miR398b-5p MIMAT0015355 Zea mays miR398b-5p 12 80
bta-miR-2903 MIMAT0013861 Bos taurus miR-2903 12 80
hvt-miR-H4-5p MIMAT0012714 Herpesvirus of miR-H4-5p 12 80
cel-miR-2213-5p MIMAT0011441 Caenorhabditis elegans miR-2213-5p 12 80
bta-miR-658 MIMAT0009362 Bos taurus miR-658 12 80
ptr-miR-658 MIMAT0008307 Pan troglodytes miR-658 12 80
cel-miR-1832a-3p MIMAT0006774 Caenorhabditis elegans miR-1832a-3p 12 80
oan-miR-1367-3p MIMAT0007032 Ornithorhynchus anatinus miR-1367-3p 12 80
hsa-miR-658 MIMAT0003336 Homo sapiens miR-658 12 80
cel-miR-56-5p MIMAT0000027 Caenorhabditis elegans miR-56-5p 12 80
>hsa-miR-6084 MIMAT0023709 Homo sapiens miR-6084
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccgcc 7
|||||||
Sbjct: 1 ttccgcc 7
>sha-miR-1549 MIMAT0022824 Sarcophilus harrisii miR-1549
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccgcc 7
|||||||
Sbjct: 1 ttccgcc 7
>dme-miR-4947-5p MIMAT0020157 Drosophila melanogaster
miR-4947-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccgcc 7
|||||||
Sbjct: 2 ttccgcc 8
>ptr-miR-718 MIMAT0012821 Pan troglodytes miR-718
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccgcc 7
|||||||
Sbjct: 2 ttccgcc 8
>hsa-miR-718 MIMAT0012735 Homo sapiens miR-718
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccgcc 7
|||||||
Sbjct: 2 ttccgcc 8
>cfa-miR-718 MIMAT0009939 Canis familiaris miR-718
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccgcc 7
|||||||
Sbjct: 2 ttccgcc 8
>mdo-miR-1549-3p MIMAT0006149 Monodelphis domestica miR-1549-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccgcc 7
|||||||
Sbjct: 1 ttccgcc 7
>mmu-miR-718 MIMAT0003514 Mus musculus miR-718
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccgcc 7
|||||||
Sbjct: 2 ttccgcc 8
>ssc-miR-9824-5p MIMAT0037042 Sus scrofa miR-9824-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 6 tccgcc 1
>cel-miR-8208-5p MIMAT0032833 Caenorhabditis elegans miR-8208-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccgcc 7
||||||
Sbjct: 1 tccgcc 6
>mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccgcc 7
||||||
Sbjct: 3 tccgcc 8
>bdi-miR7719-5p MIMAT0030160 Brachypodium distachyon miR7719-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccgcc 7
||||||
Sbjct: 1 tccgcc 6
>osa-miR7693-5p MIMAT0029957 Oryza sativa miR7693-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccgc 6
||||||
Sbjct: 3 ttccgc 8
>gga-miR-7458-5p MIMAT0029070 Gallus gallus miR-7458-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccgc 6
||||||
Sbjct: 8 ttccgc 3
>oan-miR-7434-5p MIMAT0029018 Ornithorhynchus anatinus
miR-7434-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccgc 6
||||||
Sbjct: 3 ttccgc 8
>ssc-miR-7134-3p MIMAT0028144 Sus scrofa miR-7134-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccgc 6
||||||
Sbjct: 8 ttccgc 3
>bma-miR-5869 MIMAT0026368 Brugia malayi miR-5869
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccgc 6
||||||
Sbjct: 1 ttccgc 6
>hsa-miR-6850-5p MIMAT0027600 Homo sapiens miR-6850-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccgc 6
||||||
Sbjct: 8 ttccgc 3
>hsa-miR-6125 MIMAT0024598 Homo sapiens miR-6125
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccgc 6
||||||
Sbjct: 6 ttccgc 1
>osa-miR5832 MIMAT0023307 Oryza sativa miR5832
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 8 tccgcc 3
>dme-miR-4940-5p MIMAT0020146 Drosophila melanogaster
miR-4940-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 7 tccgcc 2
>hsa-miR-4730 MIMAT0019852 Homo sapiens miR-4730
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 8 tccgcc 3
>pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 6 tccgcc 1
>ame-miR-3784 MIMAT0018563 Apis mellifera miR-3784
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccgc 6
||||||
Sbjct: 8 ttccgc 3
>ame-miR-3775 MIMAT0018552 Apis mellifera miR-3775
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 8 tccgcc 3
>ppy-miR-937 MIMAT0016137 Pongo pygmaeus miR-937
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccgc 6
||||||
Sbjct: 1 ttccgc 6
>ppy-miR-658 MIMAT0016091 Pongo pygmaeus miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 6 tccgcc 1
>esi-miR3452-3p MIMAT0017788 Ectocarpus siliculosus miR3452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccgc 6
||||||
Sbjct: 1 ttccgc 6
>esi-miR3453-3p MIMAT0017780 Ectocarpus siliculosus miR3453-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 6 tccgcc 1
>zma-miR398b-5p MIMAT0015355 Zea mays miR398b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 8 tccgcc 3
>bta-miR-2903 MIMAT0013861 Bos taurus miR-2903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccgc 6
||||||
Sbjct: 1 ttccgc 6
>hvt-miR-H4-5p MIMAT0012714 Herpesvirus of miR-H4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 6 tccgcc 1
>cel-miR-2213-5p MIMAT0011441 Caenorhabditis elegans miR-2213-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 7 tccgcc 2
>bta-miR-658 MIMAT0009362 Bos taurus miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 6 tccgcc 1
>ptr-miR-658 MIMAT0008307 Pan troglodytes miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 6 tccgcc 1
>cel-miR-1832a-3p MIMAT0006774 Caenorhabditis elegans
miR-1832a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 8 tccgcc 3
>oan-miR-1367-3p MIMAT0007032 Ornithorhynchus anatinus
miR-1367-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccgc 6
||||||
Sbjct: 8 ttccgc 3
>hsa-miR-658 MIMAT0003336 Homo sapiens miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 6 tccgcc 1
>cel-miR-56-5p MIMAT0000027 Caenorhabditis elegans miR-56-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccgcc 7
||||||
Sbjct: 7 tccgcc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 60
Number of extensions: 52
Number of successful extensions: 39
Number of sequences better than 100.0: 39
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 39
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
