BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR164
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gma-miR9748 MIMAT0036375 Glycine max miR9748 14 20
cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823 14 20
ppc-miR-8297-3p MIMAT0033112 Pristionchus pacificus miR-8297-3p 14 20
ppe-miR8122-3p MIMAT0031524 Prunus persica miR8122-3p 14 20
hsa-miR-6868-3p MIMAT0027637 Homo sapiens miR-6868-3p 14 20
ggo-miR-1252 MIMAT0024251 Gorilla gorilla miR-1252 14 20
ptr-miR-1252 MIMAT0024039 Pan troglodytes miR-1252 14 20
osa-miR5499 MIMAT0022132 Oryza sativa miR5499 14 20
tca-miR-2944c-5p MIMAT0018810 Tribolium castaneum miR-2944c-5p 14 20
ppy-miR-1252 MIMAT0016177 Pongo pygmaeus miR-1252 14 20
aae-miR-2944b-5p MIMAT0014304 Aedes aegypti miR-2944b-5p 14 20
aae-miR-2944a-5p MIMAT0014302 Aedes aegypti miR-2944a-5p 14 20
zma-miR395l-5p MIMAT0015344 Zea mays miR395l-5p 14 20
gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612 14 20
hsa-miR-1252-5p MIMAT0005944 Homo sapiens miR-1252-5p 14 20
oha-miR-205a-5p MIMAT0036815 Ophiophagus hannah miR-205a-5p 12 80
gsa-miR-71c-5p MIMAT0035320 Gyrodactylus salaris miR-71c-5p 12 80
efu-miR-205 MIMAT0035156 Eptesicus fuscus miR-205 12 80
efu-miR-9328 MIMAT0035069 Eptesicus fuscus miR-9328 12 80
efu-miR-9315 MIMAT0034991 Eptesicus fuscus miR-9315 12 80
eca-miR-9095 MIMAT0034641 Equus caballus miR-9095 12 80
ssa-miR-205b-5p MIMAT0032495 Salmo salar miR-205b-5p 12 80
ssa-miR-205a-5p MIMAT0032492 Salmo salar miR-205a-5p 12 80
hsa-miR-8080 MIMAT0031007 Homo sapiens miR-8080 12 80
prd-miR-7912-3p MIMAT0030651 Panagrellus redivivus miR-7912-3p 12 80
bdi-miR5049-5p MIMAT0030162 Brachypodium distachyon miR5049-5p 12 80
mmu-miR-7673-3p MIMAT0029853 Mus musculus miR-7673-3p 12 80
mmu-miR-7657-3p MIMAT0029821 Mus musculus miR-7657-3p 12 80
ipu-miR-205 MIMAT0029460 Ictalurus punctatus miR-205 12 80
ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b 12 80
ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a 12 80
mdo-miR-7387-3p MIMAT0028839 Monodelphis domestica miR-7387-3p 12 80
mdo-miR-7322-5p MIMAT0028644 Monodelphis domestica miR-7322-5p 12 80
mdo-miR-7297-3p MIMAT0028579 Monodelphis domestica miR-7297-3p 12 80
mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p 12 80
mdo-miR-7278-5p MIMAT0028530 Monodelphis domestica miR-7278-5p 12 80
ccr-miR-205 MIMAT0026263 Cyprinus carpio miR-205 12 80
mmu-miR-7117-3p MIMAT0028132 Mus musculus miR-7117-3p 12 80
mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p 12 80
mmu-miR-6948-3p MIMAT0027797 Mus musculus miR-6948-3p 12 80
hsa-miR-6830-5p MIMAT0027560 Homo sapiens miR-6830-5p 12 80
hsa-miR-6816-3p MIMAT0027533 Homo sapiens miR-6816-3p 12 80
gga-miR-6635-5p MIMAT0025731 Gallus gallus miR-6635-5p 12 80
mml-miR-3173 MIMAT0024331 Macaca mulatta miR-3173 12 80
cgr-miR-205 MIMAT0023845 Cricetulus griseus miR-205 12 80
osa-miR5823 MIMAT0023296 Oryza sativa miR5823 12 80
sha-miR-205 MIMAT0022812 Sarcophilus harrisii miR-205 12 80
aca-miR-205a MIMAT0021855 Anolis carolinensis miR-205a 12 80
gma-miR5377 MIMAT0021618 Glycine max miR5377 12 80
rmi-miR-5325 MIMAT0021398 Rhipicephalus microplus miR-5325 12 80
rmi-miR-5320 MIMAT0021393 Rhipicephalus microplus miR-5320 12 80
mtr-miR5212-3p MIMAT0027100 Medicago truncatula miR5212-3p 12 80
cel-miR-4920 MIMAT0020126 Caenorhabditis elegans miR-4920 12 80
pma-miR-205a-5p MIMAT0019517 Petromyzon marinus miR-205a-5p 12 80
hsa-miR-4533 MIMAT0019072 Homo sapiens miR-4533 12 80
hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914 12 80
tca-miR-3818-5p MIMAT0018660 Tribolium castaneum miR-3818-5p 12 80
ppy-miR-205 MIMAT0015798 Pongo pygmaeus miR-205 12 80
bmo-miR-3283 MIMAT0015469 Bombyx mori miR-3283 12 80
api-miR-3051 MIMAT0014792 Acyrthosiphon pisum miR-3051 12 80
zma-miR482-3p MIMAT0014027 Zea mays miR482-3p 12 80
zma-miR395k-5p MIMAT0015343 Zea mays miR395k-5p 12 80
eca-miR-1248 MIMAT0013091 Equus caballus miR-1248 12 80
eca-miR-205 MIMAT0012962 Equus caballus miR-205 12 80
hvt-miR-H10 MIMAT0012862 Herpesvirus of miR-H10 12 80
mdo-miR-205a MIMAT0012749 Monodelphis domestica miR-205a 12 80
mtr-miR2640 MIMAT0013407 Medicago truncatula miR2640 12 80
dps-miR-276c MIMAT0012293 Drosophila pseudoobscura miR-276c 12 80
dme-miR-2500-5p MIMAT0012214 Drosophila melanogaster miR-2500-5p 12 80
bta-miR-2426 MIMAT0011996 Bos taurus miR-2426 12 80
ppc-miR-2252 MIMAT0011667 Pristionchus pacificus miR-2252 12 80
cfa-miR-205 MIMAT0009845 Canis familiaris miR-205 12 80
ptr-miR-1237 MIMAT0007969 Pan troglodytes miR-1237 12 80
xla-miR-205 MIMAT0011142 Xenopus laevis miR-205 12 80
mml-miR-205 MIMAT0006236 Macaca mulatta miR-205 12 80
mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p 12 80
oan-miR-205-5p MIMAT0006866 Ornithorhynchus anatinus miR-205-5p 12 80
hsa-miR-1237-3p MIMAT0005592 Homo sapiens miR-1237-3p 12 80
tae-miR1127a MIMAT0005362 Triticum aestivum miR1127a 12 80
ppt-miR1052 MIMAT0005169 Physcomitrella patens miR1052 12 80
ppt-miR1222e MIMAT0005092 Physcomitrella patens miR1222e 12 80
ppt-miR1222c MIMAT0005090 Physcomitrella patens miR1222c 12 80
ppt-miR1222b MIMAT0005089 Physcomitrella patens miR1222b 12 80
ppt-miR902k-3p MIMAT0005086 Physcomitrella patens miR902k-3p 12 80
mdv2-miR-M25-5p MIMAT0004469 Mareks disease miR-M25-5p 12 80
mdv2-miR-M17-5p MIMAT0004456 Mareks disease miR-M17-5p 12 80
dme-miR-994-5p MIMAT0005513 Drosophila melanogaster miR-994-5p 12 80
ath-miR866-5p MIMAT0004315 Arabidopsis thaliana miR866-5p 12 80
sme-miR-71b-3p MIMAT0003986 Schmidtea mediterranea miR-71b-3p 12 80
xtr-miR-205a MIMAT0003697 Xenopus tropicalis miR-205a 12 80
xtr-miR-205b MIMAT0003622 Xenopus tropicalis miR-205b 12 80
bta-miR-205 MIMAT0003545 Bos taurus miR-205 12 80
ppt-miR1222a MIMAT0003917 Physcomitrella patens miR1222a 12 80
tni-miR-205 MIMAT0002966 Tetraodon nigroviridis miR-205 12 80
fru-miR-205 MIMAT0002965 Fugu rubripes miR-205 12 80
mne-miR-205 MIMAT0002546 Macaca nemestrina miR-205 12 80
lla-miR-205 MIMAT0002545 Lagothrix lagotricha miR-205 12 80
ptr-miR-205 MIMAT0002544 Pan troglodytes miR-205 12 80
ppa-miR-205 MIMAT0002543 Pan paniscus miR-205 12 80
age-miR-205 MIMAT0002542 Ateles geoffroyi miR-205 12 80
ggo-miR-205 MIMAT0002541 Gorilla gorilla miR-205 12 80
ssc-miR-205 MIMAT0002146 Sus scrofa miR-205 12 80
dre-miR-205-5p MIMAT0001280 Danio rerio miR-205-5p 12 80
gga-miR-205a MIMAT0001184 Gallus gallus miR-205a 12 80
rno-miR-205 MIMAT0000878 Rattus norvegicus miR-205 12 80
hsa-miR-205-5p MIMAT0000266 Homo sapiens miR-205-5p 12 80
mmu-miR-205-5p MIMAT0000238 Mus musculus miR-205-5p 12 80
>gma-miR9748 MIMAT0036375 Glycine max miR9748
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 7 ttccttc 1
>cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccttc 7
|||||||
Sbjct: 1 ttccttc 7
>ppc-miR-8297-3p MIMAT0033112 Pristionchus pacificus miR-8297-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccttc 7
|||||||
Sbjct: 1 ttccttc 7
>ppe-miR8122-3p MIMAT0031524 Prunus persica miR8122-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 8 ttccttc 2
>hsa-miR-6868-3p MIMAT0027637 Homo sapiens miR-6868-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccttc 7
|||||||
Sbjct: 1 ttccttc 7
>ggo-miR-1252 MIMAT0024251 Gorilla gorilla miR-1252
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 8 ttccttc 2
>ptr-miR-1252 MIMAT0024039 Pan troglodytes miR-1252
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 8 ttccttc 2
>osa-miR5499 MIMAT0022132 Oryza sativa miR5499
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 7 ttccttc 1
>tca-miR-2944c-5p MIMAT0018810 Tribolium castaneum miR-2944c-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 7 ttccttc 1
>ppy-miR-1252 MIMAT0016177 Pongo pygmaeus miR-1252
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 8 ttccttc 2
>aae-miR-2944b-5p MIMAT0014304 Aedes aegypti miR-2944b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 7 ttccttc 1
>aae-miR-2944a-5p MIMAT0014302 Aedes aegypti miR-2944a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 7 ttccttc 1
>zma-miR395l-5p MIMAT0015344 Zea mays miR395l-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccttc 7
|||||||
Sbjct: 2 ttccttc 8
>gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 7 ttccttc 1
>hsa-miR-1252-5p MIMAT0005944 Homo sapiens miR-1252-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccttc 7
|||||||
Sbjct: 8 ttccttc 2
>oha-miR-205a-5p MIMAT0036815 Ophiophagus hannah miR-205a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>gsa-miR-71c-5p MIMAT0035320 Gyrodactylus salaris miR-71c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 6 tccttc 1
>efu-miR-205 MIMAT0035156 Eptesicus fuscus miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>efu-miR-9328 MIMAT0035069 Eptesicus fuscus miR-9328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>efu-miR-9315 MIMAT0034991 Eptesicus fuscus miR-9315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>eca-miR-9095 MIMAT0034641 Equus caballus miR-9095
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 7 tccttc 2
>ssa-miR-205b-5p MIMAT0032495 Salmo salar miR-205b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ssa-miR-205a-5p MIMAT0032492 Salmo salar miR-205a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>hsa-miR-8080 MIMAT0031007 Homo sapiens miR-8080
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 6 tccttc 1
>prd-miR-7912-3p MIMAT0030651 Panagrellus redivivus miR-7912-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 8 ttcctt 3
>bdi-miR5049-5p MIMAT0030162 Brachypodium distachyon miR5049-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>mmu-miR-7673-3p MIMAT0029853 Mus musculus miR-7673-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 1 ttcctt 6
>mmu-miR-7657-3p MIMAT0029821 Mus musculus miR-7657-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 1 ttcctt 6
>ipu-miR-205 MIMAT0029460 Ictalurus punctatus miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>mdo-miR-7387-3p MIMAT0028839 Monodelphis domestica miR-7387-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>mdo-miR-7322-5p MIMAT0028644 Monodelphis domestica miR-7322-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>mdo-miR-7297-3p MIMAT0028579 Monodelphis domestica miR-7297-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 8 ttcctt 3
>mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>mdo-miR-7278-5p MIMAT0028530 Monodelphis domestica miR-7278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>ccr-miR-205 MIMAT0026263 Cyprinus carpio miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>mmu-miR-7117-3p MIMAT0028132 Mus musculus miR-7117-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 3 tccttc 8
>mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>mmu-miR-6948-3p MIMAT0027797 Mus musculus miR-6948-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 3 tccttc 8
>hsa-miR-6830-5p MIMAT0027560 Homo sapiens miR-6830-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 8 ttcctt 3
>hsa-miR-6816-3p MIMAT0027533 Homo sapiens miR-6816-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 6 tccttc 1
>gga-miR-6635-5p MIMAT0025731 Gallus gallus miR-6635-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>mml-miR-3173 MIMAT0024331 Macaca mulatta miR-3173
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 6 tccttc 1
>cgr-miR-205 MIMAT0023845 Cricetulus griseus miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>osa-miR5823 MIMAT0023296 Oryza sativa miR5823
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>sha-miR-205 MIMAT0022812 Sarcophilus harrisii miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>aca-miR-205a MIMAT0021855 Anolis carolinensis miR-205a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>gma-miR5377 MIMAT0021618 Glycine max miR5377
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>rmi-miR-5325 MIMAT0021398 Rhipicephalus microplus miR-5325
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>rmi-miR-5320 MIMAT0021393 Rhipicephalus microplus miR-5320
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>mtr-miR5212-3p MIMAT0027100 Medicago truncatula miR5212-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 8 ttcctt 3
>cel-miR-4920 MIMAT0020126 Caenorhabditis elegans miR-4920
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 8 ttcctt 3
>pma-miR-205a-5p MIMAT0019517 Petromyzon marinus miR-205a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>hsa-miR-4533 MIMAT0019072 Homo sapiens miR-4533
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>tca-miR-3818-5p MIMAT0018660 Tribolium castaneum miR-3818-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 1 ttcctt 6
>ppy-miR-205 MIMAT0015798 Pongo pygmaeus miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>bmo-miR-3283 MIMAT0015469 Bombyx mori miR-3283
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 1 ttcctt 6
>api-miR-3051 MIMAT0014792 Acyrthosiphon pisum miR-3051
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>zma-miR482-3p MIMAT0014027 Zea mays miR482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 3 ttcctt 8
>zma-miR395k-5p MIMAT0015343 Zea mays miR395k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 3 ttcctt 8
>eca-miR-1248 MIMAT0013091 Equus caballus miR-1248
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>eca-miR-205 MIMAT0012962 Equus caballus miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>hvt-miR-H10 MIMAT0012862 Herpesvirus of miR-H10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>mdo-miR-205a MIMAT0012749 Monodelphis domestica miR-205a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>mtr-miR2640 MIMAT0013407 Medicago truncatula miR2640
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 1 ttcctt 6
>dps-miR-276c MIMAT0012293 Drosophila pseudoobscura miR-276c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>dme-miR-2500-5p MIMAT0012214 Drosophila melanogaster
miR-2500-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 8 ttcctt 3
>bta-miR-2426 MIMAT0011996 Bos taurus miR-2426
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 6 ttcctt 1
>ppc-miR-2252 MIMAT0011667 Pristionchus pacificus miR-2252
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>cfa-miR-205 MIMAT0009845 Canis familiaris miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ptr-miR-1237 MIMAT0007969 Pan troglodytes miR-1237
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>xla-miR-205 MIMAT0011142 Xenopus laevis miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>mml-miR-205 MIMAT0006236 Macaca mulatta miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 3 ttcctt 8
>oan-miR-205-5p MIMAT0006866 Ornithorhynchus anatinus miR-205-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>hsa-miR-1237-3p MIMAT0005592 Homo sapiens miR-1237-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>tae-miR1127a MIMAT0005362 Triticum aestivum miR1127a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ppt-miR1052 MIMAT0005169 Physcomitrella patens miR1052
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcctt 6
||||||
Sbjct: 1 ttcctt 6
>ppt-miR1222e MIMAT0005092 Physcomitrella patens miR1222e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>ppt-miR1222c MIMAT0005090 Physcomitrella patens miR1222c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>ppt-miR1222b MIMAT0005089 Physcomitrella patens miR1222b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>ppt-miR902k-3p MIMAT0005086 Physcomitrella patens miR902k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>mdv2-miR-M25-5p MIMAT0004469 Mareks disease miR-M25-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 3 tccttc 8
>mdv2-miR-M17-5p MIMAT0004456 Mareks disease miR-M17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 3 tccttc 8
>dme-miR-994-5p MIMAT0005513 Drosophila melanogaster miR-994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 8 ttcctt 3
>ath-miR866-5p MIMAT0004315 Arabidopsis thaliana miR866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcctt 6
||||||
Sbjct: 8 ttcctt 3
>sme-miR-71b-3p MIMAT0003986 Schmidtea mediterranea miR-71b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>xtr-miR-205a MIMAT0003697 Xenopus tropicalis miR-205a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>xtr-miR-205b MIMAT0003622 Xenopus tropicalis miR-205b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>bta-miR-205 MIMAT0003545 Bos taurus miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ppt-miR1222a MIMAT0003917 Physcomitrella patens miR1222a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccttc 7
||||||
Sbjct: 8 tccttc 3
>tni-miR-205 MIMAT0002966 Tetraodon nigroviridis miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>fru-miR-205 MIMAT0002965 Fugu rubripes miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>mne-miR-205 MIMAT0002546 Macaca nemestrina miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>lla-miR-205 MIMAT0002545 Lagothrix lagotricha miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ptr-miR-205 MIMAT0002544 Pan troglodytes miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ppa-miR-205 MIMAT0002543 Pan paniscus miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>age-miR-205 MIMAT0002542 Ateles geoffroyi miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ggo-miR-205 MIMAT0002541 Gorilla gorilla miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>ssc-miR-205 MIMAT0002146 Sus scrofa miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>dre-miR-205-5p MIMAT0001280 Danio rerio miR-205-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>gga-miR-205a MIMAT0001184 Gallus gallus miR-205a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>rno-miR-205 MIMAT0000878 Rattus norvegicus miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>hsa-miR-205-5p MIMAT0000266 Homo sapiens miR-205-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
>mmu-miR-205-5p MIMAT0000238 Mus musculus miR-205-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccttc 7
||||||
Sbjct: 1 tccttc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 157
Number of extensions: 142
Number of successful extensions: 107
Number of sequences better than 100.0: 107
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 107
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
