BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r111.2-2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ame-miR-9866 MIMAT0037270 Apis mellifera miR-9866 14 20
bta-miR-4444 MIMAT0036978 Bos taurus miR-4444 12 80
cel-miR-8212-3p MIMAT0032845 Caenorhabditis elegans miR-8212-3p 12 80
cel-miR-8211-5p MIMAT0032842 Caenorhabditis elegans miR-8211-5p 12 80
ghr-miR7500 MIMAT0029147 Gossypium hirsutum miR7500 12 80
mmu-miR-7223-3p MIMAT0028415 Mus musculus miR-7223-3p 12 80
mse-miR-6094 MIMAT0024502 Manduca sexta miR-6094 12 80
mml-miR-1304 MIMAT0024339 Macaca mulatta miR-1304 12 80
hco-miR-5978 MIMAT0023488 Haemonchus contortus miR-5978 12 80
rmi-miR-5324 MIMAT0021397 Rhipicephalus microplus miR-5324 12 80
hsa-miR-4444 MIMAT0018962 Homo sapiens miR-4444 12 80
tca-miR-3881-5p MIMAT0018858 Tribolium castaneum miR-3881-5p 12 80
tca-miR-3869-3p MIMAT0018831 Tribolium castaneum miR-3869-3p 12 80
tca-miR-3850-3p MIMAT0018755 Tribolium castaneum miR-3850-3p 12 80
tca-miR-3847-3p MIMAT0018743 Tribolium castaneum miR-3847-3p 12 80
sja-miR-3487 MIMAT0016296 Schistosoma japonicum miR-3487 12 80
ppy-miR-1304 MIMAT0016224 Pongo pygmaeus miR-1304 12 80
aae-miR-2942 MIMAT0014300 Aedes aegypti miR-2942 12 80
aae-miR-315-3p MIMAT0015370 Aedes aegypti miR-315-3p 12 80
bta-miR-2435 MIMAT0012007 Bos taurus miR-2435 12 80
bta-miR-2284t-3p MIMAT0011832 Bos taurus miR-2284t-3p 12 80
dya-miR-314 MIMAT0009077 Drosophila yakuba miR-314 12 80
dwi-miR-314 MIMAT0009025 Drosophila willistoni miR-314 12 80
dvi-miR-314-3p MIMAT0008908 Drosophila virilis miR-314-3p 12 80
dsi-miR-314 MIMAT0008864 Drosophila simulans miR-314 12 80
dse-miR-314 MIMAT0008795 Drosophila sechellia miR-314 12 80
dpe-miR-314 MIMAT0008720 Drosophila persimilis miR-314 12 80
dmo-miR-314 MIMAT0008644 Drosophila mojavensis miR-314 12 80
dgr-miR-314 MIMAT0008598 Drosophila grimshawi miR-314 12 80
der-miR-314 MIMAT0008528 Drosophila erecta miR-314 12 80
dan-miR-314 MIMAT0008465 Drosophila ananassae miR-314 12 80
dps-miR-314 MIMAT0001260 Drosophila pseudoobscura miR-314 12 80
ath-miR402 MIMAT0001003 Arabidopsis thaliana miR402 12 80
dme-miR-315-3p MIMAT0020841 Drosophila melanogaster miR-315-3p 12 80
dme-miR-314-3p MIMAT0000406 Drosophila melanogaster miR-314-3p 12 80
>ame-miR-9866 MIMAT0037270 Apis mellifera miR-9866
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcgagt 7
|||||||
Sbjct: 1 ttcgagt 7
>bta-miR-4444 MIMAT0036978 Bos taurus miR-4444
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagt 7
||||||
Sbjct: 2 tcgagt 7
>cel-miR-8212-3p MIMAT0032845 Caenorhabditis elegans miR-8212-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 1 ttcgag 6
>cel-miR-8211-5p MIMAT0032842 Caenorhabditis elegans miR-8211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgagt 7
||||||
Sbjct: 6 tcgagt 1
>ghr-miR7500 MIMAT0029147 Gossypium hirsutum miR7500
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagt 7
||||||
Sbjct: 2 tcgagt 7
>mmu-miR-7223-3p MIMAT0028415 Mus musculus miR-7223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcgag 6
||||||
Sbjct: 8 ttcgag 3
>mse-miR-6094 MIMAT0024502 Manduca sexta miR-6094
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>mml-miR-1304 MIMAT0024339 Macaca mulatta miR-1304
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 1 ttcgag 6
>hco-miR-5978 MIMAT0023488 Haemonchus contortus miR-5978
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 1 ttcgag 6
>rmi-miR-5324 MIMAT0021397 Rhipicephalus microplus miR-5324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 1 ttcgag 6
>hsa-miR-4444 MIMAT0018962 Homo sapiens miR-4444
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagt 7
||||||
Sbjct: 2 tcgagt 7
>tca-miR-3881-5p MIMAT0018858 Tribolium castaneum miR-3881-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagt 7
||||||
Sbjct: 1 tcgagt 6
>tca-miR-3869-3p MIMAT0018831 Tribolium castaneum miR-3869-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>tca-miR-3850-3p MIMAT0018755 Tribolium castaneum miR-3850-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 1 ttcgag 6
>tca-miR-3847-3p MIMAT0018743 Tribolium castaneum miR-3847-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcgag 6
||||||
Sbjct: 6 ttcgag 1
>sja-miR-3487 MIMAT0016296 Schistosoma japonicum miR-3487
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcgag 6
||||||
Sbjct: 8 ttcgag 3
>ppy-miR-1304 MIMAT0016224 Pongo pygmaeus miR-1304
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 1 ttcgag 6
>aae-miR-2942 MIMAT0014300 Aedes aegypti miR-2942
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>aae-miR-315-3p MIMAT0015370 Aedes aegypti miR-315-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>bta-miR-2435 MIMAT0012007 Bos taurus miR-2435
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgagt 7
||||||
Sbjct: 8 tcgagt 3
>bta-miR-2284t-3p MIMAT0011832 Bos taurus miR-2284t-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgagt 7
||||||
Sbjct: 8 tcgagt 3
>dya-miR-314 MIMAT0009077 Drosophila yakuba miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dwi-miR-314 MIMAT0009025 Drosophila willistoni miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dvi-miR-314-3p MIMAT0008908 Drosophila virilis miR-314-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dsi-miR-314 MIMAT0008864 Drosophila simulans miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dse-miR-314 MIMAT0008795 Drosophila sechellia miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dpe-miR-314 MIMAT0008720 Drosophila persimilis miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dmo-miR-314 MIMAT0008644 Drosophila mojavensis miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dgr-miR-314 MIMAT0008598 Drosophila grimshawi miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>der-miR-314 MIMAT0008528 Drosophila erecta miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dan-miR-314 MIMAT0008465 Drosophila ananassae miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dps-miR-314 MIMAT0001260 Drosophila pseudoobscura miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>ath-miR402 MIMAT0001003 Arabidopsis thaliana miR402
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 1 ttcgag 6
>dme-miR-315-3p MIMAT0020841 Drosophila melanogaster miR-315-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
>dme-miR-314-3p MIMAT0000406 Drosophila melanogaster miR-314-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgag 6
||||||
Sbjct: 3 ttcgag 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 49
Number of extensions: 48
Number of successful extensions: 35
Number of sequences better than 100.0: 35
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
