BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d7-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dev-miR-D7-5p MIMAT0028177 Duck enteritis miR-D7-5p                    16   6.9  
bma-miR-5839 MIMAT0026337 Brugia malayi miR-5839                       14      27
mse-miR-3389 MIMAT0024496 Manduca sexta miR-3389                       14      27
bmo-miR-3389-5p MIMAT0015589 Bombyx mori miR-3389-5p                   14      27
bmo-miR-2764 MIMAT0013639 Bombyx mori miR-2764                         14      27
bta-miR-2425-3p MIMAT0011995 Bos taurus miR-2425-3p                    14      27
>dev-miR-D7-5p MIMAT0028177 Duck enteritis miR-D7-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttcgtagc 8
         ||||||||
Sbjct: 1 ttcgtagc 8
>bma-miR-5839 MIMAT0026337 Brugia malayi miR-5839
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttcgtag 7
         |||||||
Sbjct: 2 ttcgtag 8
>mse-miR-3389 MIMAT0024496 Manduca sexta miR-3389
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcgtagc 8
         |||||||
Sbjct: 1 tcgtagc 7
>bmo-miR-3389-5p MIMAT0015589 Bombyx mori miR-3389-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcgtagc 8
         |||||||
Sbjct: 1 tcgtagc 7
>bmo-miR-2764 MIMAT0013639 Bombyx mori miR-2764
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttcgtag 7
         |||||||
Sbjct: 1 ttcgtag 7
>bta-miR-2425-3p MIMAT0011995 Bos taurus miR-2425-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttcgtag 7
         |||||||
Sbjct: 1 ttcgtag 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 37
Number of extensions: 30
Number of successful extensions: 24
Number of sequences better than 100.0: 6
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)