BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m27-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cin-miR-4168-3p MIMAT0016776 Ciona intestinalis miR-4168-3p 14 20
mdv2-miR-M27-5p MIMAT0004472 Mareks disease miR-M27-5p 14 20
tae-miR9776 MIMAT0036988 Triticum aestivum miR9776 12 80
tae-miR9657b-5p MIMAT0035810 Triticum aestivum miR9657b-5p 12 80
nve-miR-9429-3p MIMAT0035389 Nematostella vectensis miR-9429-3p 12 80
gra-miR8714 MIMAT0034103 Gossypium raimondii miR8714 12 80
sbi-miR5564c-5p MIMAT0026390 Sorghum bicolor miR5564c-5p 12 80
ptc-miR6447 MIMAT0025250 Populus trichocarpa miR6447 12 80
hvu-miR6207 MIMAT0024835 Hordeum vulgare miR6207 12 80
ame-miR-6055 MIMAT0023679 Apis mellifera miR-6055 12 80
hco-miR-5972 MIMAT0023479 Haemonchus contortus miR-5972 12 80
osa-miR5799 MIMAT0023268 Oryza sativa miR5799 12 80
rmi-miR-5341 MIMAT0021414 Rhipicephalus microplus miR-5341 12 80
rmi-miR-5332 MIMAT0021405 Rhipicephalus microplus miR-5332 12 80
tca-miR-3855-5p MIMAT0018766 Tribolium castaneum miR-3855-5p 12 80
cin-miR-4173-5p MIMAT0016781 Ciona intestinalis miR-4173-5p 12 80
cin-miR-4144-5p MIMAT0016746 Ciona intestinalis miR-4144-5p 12 80
bmo-miR-3254 MIMAT0015437 Bombyx mori miR-3254 12 80
aae-miR-278-5p MIMAT0014237 Aedes aegypti miR-278-5p 12 80
cel-miR-2219-3p MIMAT0011460 Caenorhabditis elegans miR-2219-3p 12 80
nve-miR-2040b-3p MIMAT0009809 Nematostella vectensis miR-2040b-3p 12 80
bmo-miR-278-5p MIMAT0015291 Bombyx mori miR-278-5p 12 80
mmu-miR-1963 MIMAT0009436 Mus musculus miR-1963 12 80
gma-miR1531-3p MIMAT0007393 Glycine max miR1531-3p 12 80
hcmv-miR-UL148D MIMAT0001578 Human cytomegalovirus miR-UL148D 12 80
osa-miR416 MIMAT0001332 Oryza sativa miR416 12 80
cel-miR-59-5p MIMAT0015101 Caenorhabditis elegans miR-59-5p 12 80
>cin-miR-4168-3p MIMAT0016776 Ciona intestinalis miR-4168-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttcgtcc 7
|||||||
Sbjct: 8 ttcgtcc 2
>mdv2-miR-M27-5p MIMAT0004472 Mareks disease miR-M27-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcgtcc 7
|||||||
Sbjct: 2 ttcgtcc 8
>tae-miR9776 MIMAT0036988 Triticum aestivum miR9776
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtcc 7
||||||
Sbjct: 8 tcgtcc 3
>tae-miR9657b-5p MIMAT0035810 Triticum aestivum miR9657b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 1 ttcgtc 6
>nve-miR-9429-3p MIMAT0035389 Nematostella vectensis miR-9429-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 1 ttcgtc 6
>gra-miR8714 MIMAT0034103 Gossypium raimondii miR8714
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtcc 7
||||||
Sbjct: 8 tcgtcc 3
>sbi-miR5564c-5p MIMAT0026390 Sorghum bicolor miR5564c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 3 ttcgtc 8
>ptc-miR6447 MIMAT0025250 Populus trichocarpa miR6447
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcgtc 6
||||||
Sbjct: 8 ttcgtc 3
>hvu-miR6207 MIMAT0024835 Hordeum vulgare miR6207
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtcc 7
||||||
Sbjct: 7 tcgtcc 2
>ame-miR-6055 MIMAT0023679 Apis mellifera miR-6055
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcgtc 6
||||||
Sbjct: 8 ttcgtc 3
>hco-miR-5972 MIMAT0023479 Haemonchus contortus miR-5972
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 3 ttcgtc 8
>osa-miR5799 MIMAT0023268 Oryza sativa miR5799
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcgtc 6
||||||
Sbjct: 8 ttcgtc 3
>rmi-miR-5341 MIMAT0021414 Rhipicephalus microplus miR-5341
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtcc 7
||||||
Sbjct: 8 tcgtcc 3
>rmi-miR-5332 MIMAT0021405 Rhipicephalus microplus miR-5332
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgtcc 7
||||||
Sbjct: 1 tcgtcc 6
>tca-miR-3855-5p MIMAT0018766 Tribolium castaneum miR-3855-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 1 ttcgtc 6
>cin-miR-4173-5p MIMAT0016781 Ciona intestinalis miR-4173-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 3 ttcgtc 8
>cin-miR-4144-5p MIMAT0016746 Ciona intestinalis miR-4144-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 1 ttcgtc 6
>bmo-miR-3254 MIMAT0015437 Bombyx mori miR-3254
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtcc 7
||||||
Sbjct: 8 tcgtcc 3
>aae-miR-278-5p MIMAT0014237 Aedes aegypti miR-278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtcc 7
||||||
Sbjct: 8 tcgtcc 3
>cel-miR-2219-3p MIMAT0011460 Caenorhabditis elegans miR-2219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttcgtc 6
||||||
Sbjct: 8 ttcgtc 3
>nve-miR-2040b-3p MIMAT0009809 Nematostella vectensis
miR-2040b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 1 ttcgtc 6
>bmo-miR-278-5p MIMAT0015291 Bombyx mori miR-278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtcc 7
||||||
Sbjct: 8 tcgtcc 3
>mmu-miR-1963 MIMAT0009436 Mus musculus miR-1963
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtcc 7
||||||
Sbjct: 8 tcgtcc 3
>gma-miR1531-3p MIMAT0007393 Glycine max miR1531-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgtcc 7
||||||
Sbjct: 1 tcgtcc 6
>hcmv-miR-UL148D MIMAT0001578 Human cytomegalovirus miR-UL148D
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgtcc 7
||||||
Sbjct: 1 tcgtcc 6
>osa-miR416 MIMAT0001332 Oryza sativa miR416
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttcgtc 6
||||||
Sbjct: 3 ttcgtc 8
>cel-miR-59-5p MIMAT0015101 Caenorhabditis elegans miR-59-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgtcc 7
||||||
Sbjct: 1 tcgtcc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 36
Number of extensions: 34
Number of successful extensions: 27
Number of sequences better than 100.0: 27
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 27
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)