BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR158
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR395c-5p MIMAT0037210 Aegilops tauschii miR395c-5p 14 20
gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m 14 20
gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l 14 20
gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k 14 20
gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f 14 20
gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e 14 20
gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p 14 20
gga-miR-6619-5p MIMAT0025715 Gallus gallus miR-6619-5p 14 20
hvu-miR6204 MIMAT0024832 Hordeum vulgare miR6204 14 20
hsa-miR-5703 MIMAT0022496 Homo sapiens miR-5703 14 20
bdi-miR395e-5p MIMAT0027089 Brachypodium distachyon miR395e-5p 14 20
hsa-miR-4434 MIMAT0018950 Homo sapiens miR-4434 14 20
esi-miR3453-5p MIMAT0017779 Ectocarpus siliculosus miR3453-5p 14 20
gga-miR-1596-5p MIMAT0007460 Gallus gallus miR-1596-5p 14 20
rno-miR-207 MIMAT0003115 Rattus norvegicus miR-207 14 20
zma-miR395a-5p MIMAT0015166 Zea mays miR395a-5p 14 20
ata-miR1432-5p MIMAT0037214 Aegilops tauschii miR1432-5p 12 80
ssc-miR-9788-3p MIMAT0037005 Sus scrofa miR-9788-3p 12 80
ggo-miR-519e-5p MIMAT0036407 Gorilla gorilla miR-519e-5p 12 80
ggo-miR-515-5p MIMAT0036405 Gorilla gorilla miR-515-5p 12 80
nve-miR-9449 MIMAT0035410 Nematostella vectensis miR-9449 12 80
efu-miR-9348 MIMAT0035118 Eptesicus fuscus miR-9348 12 80
efu-miR-9306 MIMAT0034979 Eptesicus fuscus miR-9306 12 80
efu-miR-9280 MIMAT0034918 Eptesicus fuscus miR-9280 12 80
efu-miR-9268 MIMAT0034898 Eptesicus fuscus miR-9268 12 80
eca-miR-9076 MIMAT0034621 Equus caballus miR-9076 12 80
atr-miR8602 MIMAT0033891 Amborella trichopoda miR8602 12 80
sma-miR-8475-5p MIMAT0033671 Schistosoma mansoni miR-8475-5p 12 80
str-miR-47-5p MIMAT0033404 Strongyloides ratti miR-47-5p 12 80
ppc-miR-8324-5p MIMAT0033192 Pristionchus pacificus miR-8324-5p 12 80
mmu-miR-8103 MIMAT0031407 Mus musculus miR-8103 12 80
hhi-miR-7795 MIMAT0030342 Hippoglossus hippoglossus miR-7795 12 80
bdi-miR7722-5p MIMAT0030170 Brachypodium distachyon miR7722-5p 12 80
gga-miR-7439-3p MIMAT0029033 Gallus gallus miR-7439-3p 12 80
mdo-miR-30c-1-3p MIMAT0028503 Monodelphis domestica miR-30c-1-3p 12 80
mmu-miR-7050-5p MIMAT0028004 Mus musculus miR-7050-5p 12 80
mmu-miR-7037-3p MIMAT0027979 Mus musculus miR-7037-3p 12 80
mmu-miR-6975-3p MIMAT0027853 Mus musculus miR-6975-3p 12 80
hsa-miR-6878-5p MIMAT0027656 Homo sapiens miR-6878-5p 12 80
hsa-miR-6845-3p MIMAT0027591 Homo sapiens miR-6845-3p 12 80
gga-miR-6698-3p MIMAT0025805 Gallus gallus miR-6698-3p 12 80
gga-miR-6626-5p MIMAT0025722 Gallus gallus miR-6626-5p 12 80
gga-miR-6570-3p MIMAT0025648 Gallus gallus miR-6570-3p 12 80
gga-miR-6559-5p MIMAT0025625 Gallus gallus miR-6559-5p 12 80
hvu-miR6192 MIMAT0024818 Hordeum vulgare miR6192 12 80
mml-miR-519e MIMAT0024353 Macaca mulatta miR-519e 12 80
ptr-miR-4428 MIMAT0024069 Pan troglodytes miR-4428 12 80
mtr-miR5239 MIMAT0021233 Medicago truncatula miR5239 12 80
mtr-miR5221 MIMAT0021178 Medicago truncatula miR5221 12 80
hsa-miR-5192 MIMAT0021123 Homo sapiens miR-5192 12 80
osa-miR5144-3p MIMAT0021089 Oryza sativa miR5144-3p 12 80
osa-miR5075 MIMAT0020561 Oryza sativa miR5075 12 80
egr-miR-4990 MIMAT0020251 Echinococcus granulosus miR-4990 12 80
bfl-miR-4882b MIMAT0020467 Branchiostoma floridae miR-4882b 12 80
sko-miR-4830b-3p MIMAT0020043 Saccoglossus kowalevskii miR-4830b-3p 12 80
hsa-miR-4784 MIMAT0019948 Homo sapiens miR-4784 12 80
hsa-miR-4768-3p MIMAT0019921 Homo sapiens miR-4768-3p 12 80
hsa-miR-4713-5p MIMAT0019820 Homo sapiens miR-4713-5p 12 80
hsa-miR-4531 MIMAT0019070 Homo sapiens miR-4531 12 80
hsa-miR-4428 MIMAT0018943 Homo sapiens miR-4428 12 80
hsa-miR-3150b-3p MIMAT0018194 Homo sapiens miR-3150b-3p 12 80
sja-miR-3500 MIMAT0016309 Schistosoma japonicum miR-3500 12 80
ppy-miR-1253 MIMAT0016178 Pongo pygmaeus miR-1253 12 80
ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539 12 80
ppy-miR-515-5p MIMAT0015943 Pongo pygmaeus miR-515-5p 12 80
mmu-miR-3062-5p MIMAT0014830 Mus musculus miR-3062-5p 12 80
eca-miR-539 MIMAT0013167 Equus caballus miR-539 12 80
hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13 12 80
aqc-miR477f MIMAT0012583 Aquilegia caerulea miR477f 12 80
dps-miR-2556-3p MIMAT0012375 Drosophila pseudoobscura miR-2556-3p 12 80
bta-miR-2486-5p MIMAT0012081 Bos taurus miR-2486-5p 12 80
bta-miR-2454-3p MIMAT0012036 Bos taurus miR-2454-3p 12 80
bta-miR-2394 MIMAT0011947 Bos taurus miR-2394 12 80
bmo-miR-965-5p MIMAT0015295 Bombyx mori miR-965-5p 12 80
cfa-miR-207 MIMAT0009935 Canis familiaris miR-207 12 80
cfa-miR-539 MIMAT0009909 Canis familiaris miR-539 12 80
bta-miR-539 MIMAT0009342 Bos taurus miR-539 12 80
ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539 12 80
mml-miR-936 MIMAT0006537 Macaca mulatta miR-936 12 80
mml-miR-650d MIMAT0006491 Macaca mulatta miR-650d 12 80
mml-miR-539 MIMAT0006405 Macaca mulatta miR-539 12 80
mml-miR-30c-2-3p MIMAT0031117 Macaca mulatta miR-30c-2-3p 12 80
mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p 12 80
oan-miR-1402 MIMAT0007209 Ornithorhynchus anatinus miR-1402 12 80
oan-miR-1355-3p MIMAT0006952 Ornithorhynchus anatinus miR-1355-3p 12 80
mcmv-miR-m01-1 MIMAT0005533 Mouse cytomegalovirus miR-m01-1 12 80
mmu-miR-882 MIMAT0004847 Mus musculus miR-882 12 80
ath-miR830-5p MIMAT0004247 Arabidopsis thaliana miR830-5p 12 80
rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p 12 80
mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p 12 80
hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p 12 80
hsa-miR-519e-5p MIMAT0002828 Homo sapiens miR-519e-5p 12 80
hsa-miR-515-5p MIMAT0002826 Homo sapiens miR-515-5p 12 80
gga-miR-30c-2-3p MIMAT0026515 Gallus gallus miR-30c-2-3p 12 80
mmu-miR-207 MIMAT0000240 Mus musculus miR-207 12 80
>ata-miR395c-5p MIMAT0037210 Aegilops tauschii miR395c-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 2 ttctcct 8
>gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 2 ttctcct 8
>gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 2 ttctcct 8
>gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 2 ttctcct 8
>gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctcct 7
|||||||
Sbjct: 7 ttctcct 1
>gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctcct 7
|||||||
Sbjct: 7 ttctcct 1
>gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctcct 7
|||||||
Sbjct: 7 ttctcct 1
>gga-miR-6619-5p MIMAT0025715 Gallus gallus miR-6619-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctcct 7
|||||||
Sbjct: 7 ttctcct 1
>hvu-miR6204 MIMAT0024832 Hordeum vulgare miR6204
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctcct 7
|||||||
Sbjct: 7 ttctcct 1
>hsa-miR-5703 MIMAT0022496 Homo sapiens miR-5703
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctcct 7
|||||||
Sbjct: 7 ttctcct 1
>bdi-miR395e-5p MIMAT0027089 Brachypodium distachyon miR395e-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 2 ttctcct 8
>hsa-miR-4434 MIMAT0018950 Homo sapiens miR-4434
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctcct 7
|||||||
Sbjct: 7 ttctcct 1
>esi-miR3453-5p MIMAT0017779 Ectocarpus siliculosus miR3453-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 1 ttctcct 7
>gga-miR-1596-5p MIMAT0007460 Gallus gallus miR-1596-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 2 ttctcct 8
>rno-miR-207 MIMAT0003115 Rattus norvegicus miR-207
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 2 ttctcct 8
>zma-miR395a-5p MIMAT0015166 Zea mays miR395a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcct 7
|||||||
Sbjct: 2 ttctcct 8
>ata-miR1432-5p MIMAT0037214 Aegilops tauschii miR1432-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>ssc-miR-9788-3p MIMAT0037005 Sus scrofa miR-9788-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>ggo-miR-519e-5p MIMAT0036407 Gorilla gorilla miR-519e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>ggo-miR-515-5p MIMAT0036405 Gorilla gorilla miR-515-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>nve-miR-9449 MIMAT0035410 Nematostella vectensis miR-9449
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 3 tctcct 8
>efu-miR-9348 MIMAT0035118 Eptesicus fuscus miR-9348
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 3 ttctcc 8
>efu-miR-9306 MIMAT0034979 Eptesicus fuscus miR-9306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>efu-miR-9280 MIMAT0034918 Eptesicus fuscus miR-9280
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>efu-miR-9268 MIMAT0034898 Eptesicus fuscus miR-9268
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 3 ttctcc 8
>eca-miR-9076 MIMAT0034621 Equus caballus miR-9076
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>atr-miR8602 MIMAT0033891 Amborella trichopoda miR8602
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>sma-miR-8475-5p MIMAT0033671 Schistosoma mansoni miR-8475-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 3 tctcct 8
>str-miR-47-5p MIMAT0033404 Strongyloides ratti miR-47-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 7 tctcct 2
>ppc-miR-8324-5p MIMAT0033192 Pristionchus pacificus miR-8324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>mmu-miR-8103 MIMAT0031407 Mus musculus miR-8103
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>hhi-miR-7795 MIMAT0030342 Hippoglossus hippoglossus miR-7795
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 6 tctcct 1
>bdi-miR7722-5p MIMAT0030170 Brachypodium distachyon miR7722-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>gga-miR-7439-3p MIMAT0029033 Gallus gallus miR-7439-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>mdo-miR-30c-1-3p MIMAT0028503 Monodelphis domestica
miR-30c-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>mmu-miR-7050-5p MIMAT0028004 Mus musculus miR-7050-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>mmu-miR-7037-3p MIMAT0027979 Mus musculus miR-7037-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 3 tctcct 8
>mmu-miR-6975-3p MIMAT0027853 Mus musculus miR-6975-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 3 tctcct 8
>hsa-miR-6878-5p MIMAT0027656 Homo sapiens miR-6878-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>hsa-miR-6845-3p MIMAT0027591 Homo sapiens miR-6845-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 3 tctcct 8
>gga-miR-6698-3p MIMAT0025805 Gallus gallus miR-6698-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>gga-miR-6626-5p MIMAT0025722 Gallus gallus miR-6626-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 6 tctcct 1
>gga-miR-6570-3p MIMAT0025648 Gallus gallus miR-6570-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>gga-miR-6559-5p MIMAT0025625 Gallus gallus miR-6559-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>hvu-miR6192 MIMAT0024818 Hordeum vulgare miR6192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 7 tctcct 2
>mml-miR-519e MIMAT0024353 Macaca mulatta miR-519e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>ptr-miR-4428 MIMAT0024069 Pan troglodytes miR-4428
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>mtr-miR5239 MIMAT0021233 Medicago truncatula miR5239
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>mtr-miR5221 MIMAT0021178 Medicago truncatula miR5221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 6 tctcct 1
>hsa-miR-5192 MIMAT0021123 Homo sapiens miR-5192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 6 tctcct 1
>osa-miR5144-3p MIMAT0021089 Oryza sativa miR5144-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>osa-miR5075 MIMAT0020561 Oryza sativa miR5075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>egr-miR-4990 MIMAT0020251 Echinococcus granulosus miR-4990
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>bfl-miR-4882b MIMAT0020467 Branchiostoma floridae miR-4882b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>sko-miR-4830b-3p MIMAT0020043 Saccoglossus kowalevskii
miR-4830b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>hsa-miR-4784 MIMAT0019948 Homo sapiens miR-4784
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>hsa-miR-4768-3p MIMAT0019921 Homo sapiens miR-4768-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>hsa-miR-4713-5p MIMAT0019820 Homo sapiens miR-4713-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>hsa-miR-4531 MIMAT0019070 Homo sapiens miR-4531
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>hsa-miR-4428 MIMAT0018943 Homo sapiens miR-4428
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>hsa-miR-3150b-3p MIMAT0018194 Homo sapiens miR-3150b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>sja-miR-3500 MIMAT0016309 Schistosoma japonicum miR-3500
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 6 tctcct 1
>ppy-miR-1253 MIMAT0016178 Pongo pygmaeus miR-1253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>ppy-miR-515-5p MIMAT0015943 Pongo pygmaeus miR-515-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>mmu-miR-3062-5p MIMAT0014830 Mus musculus miR-3062-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>eca-miR-539 MIMAT0013167 Equus caballus miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 3 ttctcc 8
>aqc-miR477f MIMAT0012583 Aquilegia caerulea miR477f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 2 tctcct 7
>dps-miR-2556-3p MIMAT0012375 Drosophila pseudoobscura
miR-2556-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 3 ttctcc 8
>bta-miR-2486-5p MIMAT0012081 Bos taurus miR-2486-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>bta-miR-2454-3p MIMAT0012036 Bos taurus miR-2454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>bta-miR-2394 MIMAT0011947 Bos taurus miR-2394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>bmo-miR-965-5p MIMAT0015295 Bombyx mori miR-965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>cfa-miR-207 MIMAT0009935 Canis familiaris miR-207
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 3 ttctcc 8
>cfa-miR-539 MIMAT0009909 Canis familiaris miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>bta-miR-539 MIMAT0009342 Bos taurus miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>mml-miR-936 MIMAT0006537 Macaca mulatta miR-936
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>mml-miR-650d MIMAT0006491 Macaca mulatta miR-650d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 6 tctcct 1
>mml-miR-539 MIMAT0006405 Macaca mulatta miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>mml-miR-30c-2-3p MIMAT0031117 Macaca mulatta miR-30c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 3 ttctcc 8
>oan-miR-1402 MIMAT0007209 Ornithorhynchus anatinus miR-1402
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>oan-miR-1355-3p MIMAT0006952 Ornithorhynchus anatinus
miR-1355-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcct 7
||||||
Sbjct: 1 tctcct 6
>mcmv-miR-m01-1 MIMAT0005533 Mouse cytomegalovirus miR-m01-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 8 tctcct 3
>mmu-miR-882 MIMAT0004847 Mus musculus miR-882
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcct 7
||||||
Sbjct: 6 tctcct 1
>ath-miR830-5p MIMAT0004247 Arabidopsis thaliana miR830-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 3 ttctcc 8
>rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 6 ttctcc 1
>hsa-miR-519e-5p MIMAT0002828 Homo sapiens miR-519e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>hsa-miR-515-5p MIMAT0002826 Homo sapiens miR-515-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 1 ttctcc 6
>gga-miR-30c-2-3p MIMAT0026515 Gallus gallus miR-30c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcc 6
||||||
Sbjct: 8 ttctcc 3
>mmu-miR-207 MIMAT0000240 Mus musculus miR-207
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcc 6
||||||
Sbjct: 3 ttctcc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 248
Number of extensions: 232
Number of successful extensions: 95
Number of sequences better than 100.0: 95
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 95
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)