BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-ul59-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
atr-miR8581 MIMAT0033865 Amborella trichopoda miR8581 14 20
bdi-miR7754-3p MIMAT0030251 Brachypodium distachyon miR7754-3p 14 20
hcmv-miR-UL59 MIMAT0029122 Human cytomegalovirus miR-UL59 14 20
mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p 14 20
hsa-miR-6873-3p MIMAT0027647 Homo sapiens miR-6873-3p 14 20
hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p 14 20
ath-miR5640 MIMAT0022401 Arabidopsis thaliana miR5640 14 20
gma-miR1513b MIMAT0021008 Glycine max miR1513b 14 20
hsa-miR-4768-5p MIMAT0019920 Homo sapiens miR-4768-5p 14 20
ame-miR-3717 MIMAT0018512 Apis mellifera miR-3717 14 20
osa-miR2100-5p MIMAT0010064 Oryza sativa miR2100-5p 14 20
ath-miR1886.1 MIMAT0007853 Arabidopsis thaliana miR1886.1 14 20
gma-miR1513a-5p MIMAT0007371 Glycine max miR1513a-5p 14 20
ssc-miR-9787-3p MIMAT0037004 Sus scrofa miR-9787-3p 12 80
tch-miR-185-5p MIMAT0036564 Tupaia chinensis miR-185-5p 12 80
tch-miR-6529 MIMAT0036481 Tupaia chinensis miR-6529 12 80
bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p 12 80
sly-miR477-5p MIMAT0035483 Solanum lycopersicum miR477-5p 12 80
efu-miR-185 MIMAT0035073 Eptesicus fuscus miR-185 12 80
gra-miR8686 MIMAT0034059 Gossypium raimondii miR8686 12 80
atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586 12 80
sma-miR-281-5p MIMAT0033592 Schistosoma mansoni miR-281-5p 12 80
ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p 12 80
ppc-miR-8364u-5p MIMAT0033123 Pristionchus pacificus miR-8364u-5p 12 80
cpa-miR8143 MIMAT0031840 Carica papaya miR8143 12 80
ppe-miR6267c-3p MIMAT0031543 Prunus persica miR6267c-3p 12 80
aly-miR173b-3p MIMAT0031389 Arabidopsis lyrata miR173b-3p 12 80
mmu-miR-7649-3p MIMAT0029801 Mus musculus miR-7649-3p 12 80
lja-miR7539 MIMAT0029365 Lotus japonicus miR7539 12 80
gga-miR-7480-3p MIMAT0029115 Gallus gallus miR-7480-3p 12 80
mml-miR-6529-5p MIMAT0028314 Macaca mulatta miR-6529-5p 12 80
hsa-miR-7110-3p MIMAT0028118 Homo sapiens miR-7110-3p 12 80
ddi-miR-7097 MIMAT0028100 Dictyostelium discoideum miR-7097 12 80
mmu-miR-7028-3p MIMAT0027961 Mus musculus miR-7028-3p 12 80
mmu-miR-6975-3p MIMAT0027853 Mus musculus miR-6975-3p 12 80
hsa-miR-6895-3p MIMAT0027691 Homo sapiens miR-6895-3p 12 80
hsa-miR-6817-3p MIMAT0027535 Homo sapiens miR-6817-3p 12 80
gga-miR-6631-5p MIMAT0025727 Gallus gallus miR-6631-5p 12 80
gga-miR-6626-5p MIMAT0025722 Gallus gallus miR-6626-5p 12 80
gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p 12 80
bta-miR-6529a MIMAT0025565 Bos taurus miR-6529a 12 80
nta-miR477b MIMAT0024722 Nicotiana tabacum miR477b 12 80
ggo-miR-3615 MIMAT0024281 Gorilla gorilla miR-3615 12 80
ggo-miR-185 MIMAT0024086 Gorilla gorilla miR-185 12 80
cgr-miR-185-5p MIMAT0023811 Cricetulus griseus miR-185-5p 12 80
ame-miR-6001-3p MIMAT0023542 Apis mellifera miR-6001-3p 12 80
mtr-miR5750 MIMAT0023130 Medicago truncatula miR5750 12 80
tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p 12 80
aca-miR-5465 MIMAT0022098 Anolis carolinensis miR-5465 12 80
aca-miR-5402-5p MIMAT0022012 Anolis carolinensis miR-5402-5p 12 80
gma-miR4413b MIMAT0021675 Glycine max miR4413b 12 80
mtr-miR5221 MIMAT0021178 Medicago truncatula miR5221 12 80
mmu-miR-3473c MIMAT0020614 Mus musculus miR-3473c 12 80
dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster miR-4945-5p 12 80
hsa-miR-4753-3p MIMAT0019891 Homo sapiens miR-4753-3p 12 80
hsa-miR-4644 MIMAT0019704 Homo sapiens miR-4644 12 80
osa-miR3979-5p MIMAT0019673 Oryza sativa miR3979-5p 12 80
hsa-miR-3919 MIMAT0018193 Homo sapiens miR-3919 12 80
hsa-miR-3615 MIMAT0017994 Homo sapiens miR-3615 12 80
hsa-miR-4306 MIMAT0016858 Homo sapiens miR-4306 12 80
sja-miR-3507 MIMAT0016316 Schistosoma japonicum miR-3507 12 80
ppy-miR-942 MIMAT0016140 Pongo pygmaeus miR-942 12 80
ppy-miR-185 MIMAT0015781 Pongo pygmaeus miR-185 12 80
mmu-miR-3473a MIMAT0015645 Mus musculus miR-3473a 12 80
aly-miR859-5p MIMAT0017647 Arabidopsis lyrata miR859-5p 12 80
aly-miR173a-3p MIMAT0017532 Arabidopsis lyrata miR173a-3p 12 80
bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239 12 80
osa-miR2930 MIMAT0014061 Oryza sativa miR2930 12 80
cte-miR-2716 MIMAT0013585 Capitella teleta miR-2716 12 80
dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p 12 80
hsa-miR-2117 MIMAT0011162 Homo sapiens miR-2117 12 80
osa-miR2097-3p MIMAT0010059 Oryza sativa miR2097-3p 12 80
bta-miR-185 MIMAT0009247 Bos taurus miR-185 12 80
dvi-miR-6-1-5p MIMAT0032090 Drosophila virilis miR-6-1-5p 12 80
dvi-miR-6-3-5p MIMAT0032070 Drosophila virilis miR-6-3-5p 12 80
ptr-miR-942 MIMAT0008348 Pan troglodytes miR-942 12 80
ptr-miR-185 MIMAT0008053 Pan troglodytes miR-185 12 80
ptr-miR-1253 MIMAT0007978 Pan troglodytes miR-1253 12 80
ssc-miR-185 MIMAT0007759 Sus scrofa miR-185 12 80
cfa-miR-185 MIMAT0006660 Canis familiaris miR-185 12 80
mml-miR-185-5p MIMAT0006219 Macaca mulatta miR-185-5p 12 80
gga-miR-1756b MIMAT0007712 Gallus gallus miR-1756b 12 80
hiv1-miR-TAR-5p MIMAT0006016 Human immunodeficiency miR-TAR-5p 12 80
oan-miR-1406-3p MIMAT0007215 Ornithorhynchus anatinus miR-1406-3p 12 80
oan-miR-1328 MIMAT0006797 Ornithorhynchus anatinus miR-1328 12 80
hsa-miR-1253 MIMAT0005904 Homo sapiens miR-1253 12 80
mcmv-miR-m01-2-5p MIMAT0005534 Mouse cytomegalovirus miR-m01-2-5p 12 80
ppt-miR1049 MIMAT0005165 Physcomitrella patens miR1049 12 80
ppt-miR1029 MIMAT0005122 Physcomitrella patens miR1029 12 80
ppt-miR1023b-3p MIMAT0005105 Physcomitrella patens miR1023b-3p 12 80
ppt-miR1023a-3p MIMAT0005103 Physcomitrella patens miR1023a-3p 12 80
hsa-miR-942-5p MIMAT0004985 Homo sapiens miR-942-5p 12 80
mmu-miR-882 MIMAT0004847 Mus musculus miR-882 12 80
mmu-miR-881-5p MIMAT0004845 Mus musculus miR-881-5p 12 80
ath-miR859 MIMAT0004303 Arabidopsis thaliana miR859 12 80
mmu-miR-741-3p MIMAT0004236 Mus musculus miR-741-3p 12 80
mmu-miR-706 MIMAT0003496 Mus musculus miR-706 12 80
rno-miR-185-5p MIMAT0000862 Rattus norvegicus miR-185-5p 12 80
hsa-miR-185-5p MIMAT0000455 Homo sapiens miR-185-5p 12 80
mmu-miR-185-5p MIMAT0000214 Mus musculus miR-185-5p 12 80
>atr-miR8581 MIMAT0033865 Amborella trichopoda miR8581
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctctc 7
|||||||
Sbjct: 8 ttctctc 2
>bdi-miR7754-3p MIMAT0030251 Brachypodium distachyon miR7754-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctctc 7
|||||||
Sbjct: 1 ttctctc 7
>hcmv-miR-UL59 MIMAT0029122 Human cytomegalovirus miR-UL59
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctctc 7
|||||||
Sbjct: 2 ttctctc 8
>mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctctc 7
|||||||
Sbjct: 2 ttctctc 8
>hsa-miR-6873-3p MIMAT0027647 Homo sapiens miR-6873-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctctc 7
|||||||
Sbjct: 1 ttctctc 7
>hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctctc 7
|||||||
Sbjct: 2 ttctctc 8
>ath-miR5640 MIMAT0022401 Arabidopsis thaliana miR5640
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctctc 7
|||||||
Sbjct: 8 ttctctc 2
>gma-miR1513b MIMAT0021008 Glycine max miR1513b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctctc 7
|||||||
Sbjct: 8 ttctctc 2
>hsa-miR-4768-5p MIMAT0019920 Homo sapiens miR-4768-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctctc 7
|||||||
Sbjct: 2 ttctctc 8
>ame-miR-3717 MIMAT0018512 Apis mellifera miR-3717
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctctc 7
|||||||
Sbjct: 8 ttctctc 2
>osa-miR2100-5p MIMAT0010064 Oryza sativa miR2100-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctctc 7
|||||||
Sbjct: 1 ttctctc 7
>ath-miR1886.1 MIMAT0007853 Arabidopsis thaliana miR1886.1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctctc 7
|||||||
Sbjct: 8 ttctctc 2
>gma-miR1513a-5p MIMAT0007371 Glycine max miR1513a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttctctc 7
|||||||
Sbjct: 8 ttctctc 2
>ssc-miR-9787-3p MIMAT0037004 Sus scrofa miR-9787-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>tch-miR-185-5p MIMAT0036564 Tupaia chinensis miR-185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>tch-miR-6529 MIMAT0036481 Tupaia chinensis miR-6529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 6 tctctc 1
>bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 6 tctctc 1
>sly-miR477-5p MIMAT0035483 Solanum lycopersicum miR477-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 3 tctctc 8
>efu-miR-185 MIMAT0035073 Eptesicus fuscus miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>gra-miR8686 MIMAT0034059 Gossypium raimondii miR8686
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>sma-miR-281-5p MIMAT0033592 Schistosoma mansoni miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 6 tctctc 1
>ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>ppc-miR-8364u-5p MIMAT0033123 Pristionchus pacificus
miR-8364u-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>cpa-miR8143 MIMAT0031840 Carica papaya miR8143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 6 tctctc 1
>ppe-miR6267c-3p MIMAT0031543 Prunus persica miR6267c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>aly-miR173b-3p MIMAT0031389 Arabidopsis lyrata miR173b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>mmu-miR-7649-3p MIMAT0029801 Mus musculus miR-7649-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>lja-miR7539 MIMAT0029365 Lotus japonicus miR7539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>gga-miR-7480-3p MIMAT0029115 Gallus gallus miR-7480-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 1 ttctct 6
>mml-miR-6529-5p MIMAT0028314 Macaca mulatta miR-6529-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 6 tctctc 1
>hsa-miR-7110-3p MIMAT0028118 Homo sapiens miR-7110-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 3 tctctc 8
>ddi-miR-7097 MIMAT0028100 Dictyostelium discoideum miR-7097
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 1 ttctct 6
>mmu-miR-7028-3p MIMAT0027961 Mus musculus miR-7028-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>mmu-miR-6975-3p MIMAT0027853 Mus musculus miR-6975-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>hsa-miR-6895-3p MIMAT0027691 Homo sapiens miR-6895-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 3 tctctc 8
>hsa-miR-6817-3p MIMAT0027535 Homo sapiens miR-6817-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>gga-miR-6631-5p MIMAT0025727 Gallus gallus miR-6631-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 8 ttctct 3
>gga-miR-6626-5p MIMAT0025722 Gallus gallus miR-6626-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 7 tctctc 2
>bta-miR-6529a MIMAT0025565 Bos taurus miR-6529a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 6 tctctc 1
>nta-miR477b MIMAT0024722 Nicotiana tabacum miR477b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>ggo-miR-3615 MIMAT0024281 Gorilla gorilla miR-3615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>ggo-miR-185 MIMAT0024086 Gorilla gorilla miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>cgr-miR-185-5p MIMAT0023811 Cricetulus griseus miR-185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>ame-miR-6001-3p MIMAT0023542 Apis mellifera miR-6001-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 1 ttctct 6
>mtr-miR5750 MIMAT0023130 Medicago truncatula miR5750
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>aca-miR-5465 MIMAT0022098 Anolis carolinensis miR-5465
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>aca-miR-5402-5p MIMAT0022012 Anolis carolinensis miR-5402-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>gma-miR4413b MIMAT0021675 Glycine max miR4413b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 8 ttctct 3
>mtr-miR5221 MIMAT0021178 Medicago truncatula miR5221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>mmu-miR-3473c MIMAT0020614 Mus musculus miR-3473c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster
miR-4945-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>hsa-miR-4753-3p MIMAT0019891 Homo sapiens miR-4753-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 1 ttctct 6
>hsa-miR-4644 MIMAT0019704 Homo sapiens miR-4644
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>osa-miR3979-5p MIMAT0019673 Oryza sativa miR3979-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 3 tctctc 8
>hsa-miR-3919 MIMAT0018193 Homo sapiens miR-3919
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 8 ttctct 3
>hsa-miR-3615 MIMAT0017994 Homo sapiens miR-3615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>hsa-miR-4306 MIMAT0016858 Homo sapiens miR-4306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>sja-miR-3507 MIMAT0016316 Schistosoma japonicum miR-3507
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>ppy-miR-942 MIMAT0016140 Pongo pygmaeus miR-942
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>ppy-miR-185 MIMAT0015781 Pongo pygmaeus miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>mmu-miR-3473a MIMAT0015645 Mus musculus miR-3473a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>aly-miR859-5p MIMAT0017647 Arabidopsis lyrata miR859-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>aly-miR173a-3p MIMAT0017532 Arabidopsis lyrata miR173a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 8 ttctct 3
>osa-miR2930 MIMAT0014061 Oryza sativa miR2930
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 1 ttctct 6
>cte-miR-2716 MIMAT0013585 Capitella teleta miR-2716
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 6 tctctc 1
>dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 3 tctctc 8
>hsa-miR-2117 MIMAT0011162 Homo sapiens miR-2117
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>osa-miR2097-3p MIMAT0010059 Oryza sativa miR2097-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 1 ttctct 6
>bta-miR-185 MIMAT0009247 Bos taurus miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>dvi-miR-6-1-5p MIMAT0032090 Drosophila virilis miR-6-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>dvi-miR-6-3-5p MIMAT0032070 Drosophila virilis miR-6-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>ptr-miR-942 MIMAT0008348 Pan troglodytes miR-942
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>ptr-miR-185 MIMAT0008053 Pan troglodytes miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>ptr-miR-1253 MIMAT0007978 Pan troglodytes miR-1253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>ssc-miR-185 MIMAT0007759 Sus scrofa miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>cfa-miR-185 MIMAT0006660 Canis familiaris miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>mml-miR-185-5p MIMAT0006219 Macaca mulatta miR-185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>gga-miR-1756b MIMAT0007712 Gallus gallus miR-1756b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 1 ttctct 6
>hiv1-miR-TAR-5p MIMAT0006016 Human immunodeficiency miR-TAR-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>oan-miR-1406-3p MIMAT0007215 Ornithorhynchus anatinus
miR-1406-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 3 tctctc 8
>oan-miR-1328 MIMAT0006797 Ornithorhynchus anatinus miR-1328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 6 tctctc 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>hsa-miR-1253 MIMAT0005904 Homo sapiens miR-1253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>mcmv-miR-m01-2-5p MIMAT0005534 Mouse cytomegalovirus
miR-m01-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 8 ttctct 3
>ppt-miR1049 MIMAT0005165 Physcomitrella patens miR1049
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>ppt-miR1029 MIMAT0005122 Physcomitrella patens miR1029
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 3 tctctc 8
>ppt-miR1023b-3p MIMAT0005105 Physcomitrella patens miR1023b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>ppt-miR1023a-3p MIMAT0005103 Physcomitrella patens miR1023a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>hsa-miR-942-5p MIMAT0004985 Homo sapiens miR-942-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctct 6
||||||
Sbjct: 3 ttctct 8
>mmu-miR-882 MIMAT0004847 Mus musculus miR-882
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>mmu-miR-881-5p MIMAT0004845 Mus musculus miR-881-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>ath-miR859 MIMAT0004303 Arabidopsis thaliana miR859
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctc 7
||||||
Sbjct: 1 tctctc 6
>mmu-miR-741-3p MIMAT0004236 Mus musculus miR-741-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 7 tctctc 2
>mmu-miR-706 MIMAT0003496 Mus musculus miR-706
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctct 6
||||||
Sbjct: 6 ttctct 1
>rno-miR-185-5p MIMAT0000862 Rattus norvegicus miR-185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>hsa-miR-185-5p MIMAT0000455 Homo sapiens miR-185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
>mmu-miR-185-5p MIMAT0000214 Mus musculus miR-185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctc 7
||||||
Sbjct: 8 tctctc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 137
Number of extensions: 124
Number of successful extensions: 104
Number of sequences better than 100.0: 100
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 104
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
