BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= jcv-miR-j1-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7026-5p MIMAT0027956 Mus musculus miR-7026-5p 16 6.9
jcv-miR-J1-5p MIMAT0009147 JC polyomavirus miR-J1-5p 16 6.9
ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p 14 27
nve-miR-9464 MIMAT0035429 Nematostella vectensis miR-9464 14 27
efu-miR-143 MIMAT0035123 Eptesicus fuscus miR-143 14 27
eca-miR-9105 MIMAT0034652 Equus caballus miR-9105 14 27
eca-miR-8941 MIMAT0034470 Equus caballus miR-8941 14 27
mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p 14 27
hsa-miR-6761-5p MIMAT0027422 Homo sapiens miR-6761-5p 14 27
hsa-miR-4303 MIMAT0016856 Homo sapiens miR-4303 14 27
bkv-miR-B1-5p MIMAT0009149 BK polyomavirus miR-B1-5p 14 27
cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837 14 27
>mmu-miR-7026-5p MIMAT0027956 Mus musculus miR-7026-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttctgaga 8
||||||||
Sbjct: 1 ttctgaga 8
>jcv-miR-J1-5p MIMAT0009147 JC polyomavirus miR-J1-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttctgaga 8
||||||||
Sbjct: 1 ttctgaga 8
>ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctgaga 8
|||||||
Sbjct: 7 tctgaga 1
>nve-miR-9464 MIMAT0035429 Nematostella vectensis miR-9464
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgaga 8
|||||||
Sbjct: 1 tctgaga 7
>efu-miR-143 MIMAT0035123 Eptesicus fuscus miR-143
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgaga 8
|||||||
Sbjct: 2 tctgaga 8
>eca-miR-9105 MIMAT0034652 Equus caballus miR-9105
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgaga 8
|||||||
Sbjct: 1 tctgaga 7
>eca-miR-8941 MIMAT0034470 Equus caballus miR-8941
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgaga 8
|||||||
Sbjct: 1 tctgaga 7
>mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctgaga 8
|||||||
Sbjct: 7 tctgaga 1
>hsa-miR-6761-5p MIMAT0027422 Homo sapiens miR-6761-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgaga 8
|||||||
Sbjct: 1 tctgaga 7
>hsa-miR-4303 MIMAT0016856 Homo sapiens miR-4303
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctgag 7
|||||||
Sbjct: 1 ttctgag 7
>bkv-miR-B1-5p MIMAT0009149 BK polyomavirus miR-B1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgaga 8
|||||||
Sbjct: 2 tctgaga 8
>cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctgaga 8
|||||||
Sbjct: 7 tctgaga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 152
Number of extensions: 138
Number of successful extensions: 103
Number of sequences better than 100.0: 12
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
