BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b7-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p 16 6.9
efu-miR-9223e MIMAT0034819 Eptesicus fuscus miR-9223e 14 27
cfa-miR-8872 MIMAT0034369 Canis familiaris miR-8872 14 27
mmu-miR-6907-5p MIMAT0027714 Mus musculus miR-6907-5p 14 27
mmu-miR-1231-5p MIMAT0022357 Mus musculus miR-1231-5p 14 27
hsa-miR-5189-5p MIMAT0021120 Homo sapiens miR-5189-5p 14 27
oar-miR-134-3p MIMAT0019309 Ovis aries miR-134-3p 14 27
pab-miR950-3p MIMAT0018124 Picea abies miR950-3p 14 27
ppy-miR-1285b MIMAT0016208 Pongo pygmaeus miR-1285b 14 27
bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751 14 27
ptr-miR-1285 MIMAT0008004 Pan troglodytes miR-1285 14 27
odi-miR-1476-5p MIMAT0006027 Oikopleura dioica miR-1476-5p 14 27
odi-miR-1475 MIMAT0006026 Oikopleura dioica miR-1475 14 27
hsa-miR-1285-3p MIMAT0005876 Homo sapiens miR-1285-3p 14 27
>hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttctgggc 8
||||||||
Sbjct: 1 ttctgggc 8
>efu-miR-9223e MIMAT0034819 Eptesicus fuscus miR-9223e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctggg 7
|||||||
Sbjct: 1 ttctggg 7
>cfa-miR-8872 MIMAT0034369 Canis familiaris miR-8872
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctggg 7
|||||||
Sbjct: 1 ttctggg 7
>mmu-miR-6907-5p MIMAT0027714 Mus musculus miR-6907-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctggg 7
|||||||
Sbjct: 1 ttctggg 7
>mmu-miR-1231-5p MIMAT0022357 Mus musculus miR-1231-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
>hsa-miR-5189-5p MIMAT0021120 Homo sapiens miR-5189-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
>oar-miR-134-3p MIMAT0019309 Ovis aries miR-134-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
>pab-miR950-3p MIMAT0018124 Picea abies miR950-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
>ppy-miR-1285b MIMAT0016208 Pongo pygmaeus miR-1285b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
>bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 2 tctgggc 8
>ptr-miR-1285 MIMAT0008004 Pan troglodytes miR-1285
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
>odi-miR-1476-5p MIMAT0006027 Oikopleura dioica miR-1476-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
>odi-miR-1475 MIMAT0006026 Oikopleura dioica miR-1475
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
>hsa-miR-1285-3p MIMAT0005876 Homo sapiens miR-1285-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctgggc 8
|||||||
Sbjct: 1 tctgggc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 161
Number of extensions: 146
Number of successful extensions: 119
Number of sequences better than 100.0: 14
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)