BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR77
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tae-miR1120b-3p MIMAT0035794 Triticum aestivum miR1120b-3p 14 20
gra-miR7484g MIMAT0034206 Gossypium raimondii miR7484g 14 20
ptc-miR7818 MIMAT0030378 Populus trichocarpa miR7818 14 20
ipu-miR-7570 MIMAT0029569 Ictalurus punctatus miR-7570 14 20
gma-miR171i-5p MIMAT0021056 Glycine max miR171i-5p 14 20
hvt-miR-H12-5p MIMAT0012863 Herpesvirus of miR-H12-5p 14 20
oha-miR-208-3p MIMAT0036821 Ophiophagus hannah miR-208-3p 12 80
chi-miR-208b MIMAT0036053 Capra hircus miR-208b 12 80
tae-miR1130b-3p MIMAT0035796 Triticum aestivum miR1130b-3p 12 80
tae-miR9673-5p MIMAT0035791 Triticum aestivum miR9673-5p 12 80
dvi-miR-970-3p MIMAT0035591 Drosophila virilis miR-970-3p 12 80
bdi-miR5281a MIMAT0035540 Brachypodium distachyon miR5281a 12 80
bdi-miR5281b MIMAT0035539 Brachypodium distachyon miR5281b 12 80
gra-miR8742b MIMAT0034159 Gossypium raimondii miR8742b 12 80
gra-miR8742a MIMAT0034158 Gossypium raimondii miR8742a 12 80
sma-miR-8406-3p MIMAT0033517 Schistosoma mansoni miR-8406-3p 12 80
cel-miR-8189-5p MIMAT0032791 Caenorhabditis elegans miR-8189-5p 12 80
ptc-miR6462f MIMAT0030376 Populus trichocarpa miR6462f 12 80
ptc-miR6462e MIMAT0030375 Populus trichocarpa miR6462e 12 80
hhi-miR-7791 MIMAT0030336 Hippoglossus hippoglossus miR-7791 12 80
bdi-miR7715-3p MIMAT0030153 Brachypodium distachyon miR7715-3p 12 80
bdi-miR5181c-3p MIMAT0030108 Brachypodium distachyon miR5181c-3p 12 80
mdo-miR-7328-3p MIMAT0028659 Monodelphis domestica miR-7328-3p 12 80
mdo-miR-208b-3p MIMAT0028613 Monodelphis domestica miR-208b-3p 12 80
ptc-miR6462d MIMAT0025224 Populus trichocarpa miR6462d 12 80
ptc-miR6462c-3p MIMAT0025206 Populus trichocarpa miR6462c-3p 12 80
ptc-miR6462b MIMAT0025204 Populus trichocarpa miR6462b 12 80
ptc-miR6462a MIMAT0025188 Populus trichocarpa miR6462a 12 80
hme-miR-970 MIMAT0024997 Heliconius melpomene miR-970 12 80
mse-miR-970 MIMAT0024453 Manduca sexta miR-970 12 80
aca-miR-208-3p MIMAT0021860 Anolis carolinensis miR-208-3p 12 80
mtr-miR5281f MIMAT0021325 Medicago truncatula miR5281f 12 80
mtr-miR5281e MIMAT0021324 Medicago truncatula miR5281e 12 80
mtr-miR5281d MIMAT0021323 Medicago truncatula miR5281d 12 80
mtr-miR5281c MIMAT0021322 Medicago truncatula miR5281c 12 80
mtr-miR5281b MIMAT0021321 Medicago truncatula miR5281b 12 80
pma-miR-208-3p MIMAT0019521 Petromyzon marinus miR-208-3p 12 80
gma-miR1520e MIMAT0018243 Glycine max miR1520e 12 80
tca-miR-3883-5p MIMAT0018862 Tribolium castaneum miR-3883-5p 12 80
tca-miR-3811e-5p MIMAT0018664 Tribolium castaneum miR-3811e-5p 12 80
hsa-miR-3658 MIMAT0018078 Homo sapiens miR-3658 12 80
rno-miR-208b-3p MIMAT0017845 Rattus norvegicus miR-208b-3p 12 80
ppy-miR-208b MIMAT0015800 Pongo pygmaeus miR-208b 12 80
ppy-miR-208a MIMAT0015799 Pongo pygmaeus miR-208a 12 80
cqu-miR-970 MIMAT0014378 Culex quinquefasciatus miR-970 12 80
aae-miR-970 MIMAT0014292 Aedes aegypti miR-970 12 80
ath-miR2937 MIMAT0014141 Arabidopsis thaliana miR2937 12 80
ssc-miR-208b MIMAT0013912 Sus scrofa miR-208b 12 80
eca-miR-208b MIMAT0012900 Equus caballus miR-208b 12 80
eca-miR-208a MIMAT0012899 Equus caballus miR-208a 12 80
bmo-miR-2790-3p MIMAT0013688 Bombyx mori miR-2790-3p 12 80
dsi-miR-970-3p MIMAT0012488 Drosophila simulans miR-970-3p 12 80
dps-miR-970-3p MIMAT0012222 Drosophila pseudoobscura miR-970-3p 12 80
sme-miR-8b-5p MIMAT0012139 Schmidtea mediterranea miR-8b-5p 12 80
hsa-miR-2116-5p MIMAT0011160 Homo sapiens miR-2116-5p 12 80
bmo-miR-970-3p MIMAT0010125 Bombyx mori miR-970-3p 12 80
aga-miR-970 MIMAT0010105 Anopheles gambiae miR-970 12 80
tca-miR-970-3p MIMAT0010092 Tribolium castaneum miR-970-3p 12 80
cfa-miR-208b MIMAT0009869 Canis familiaris miR-208b 12 80
cfa-miR-208a MIMAT0009868 Canis familiaris miR-208a 12 80
bta-miR-208b MIMAT0009262 Bos taurus miR-208b 12 80
bta-miR-208a MIMAT0009261 Bos taurus miR-208a 12 80
ptr-miR-208b MIMAT0008068 Pan troglodytes miR-208b 12 80
ptr-miR-208a MIMAT0008067 Pan troglodytes miR-208a 12 80
mml-miR-208b-3p MIMAT0006239 Macaca mulatta miR-208b-3p 12 80
mml-miR-208a-3p MIMAT0006238 Macaca mulatta miR-208a-3p 12 80
gga-miR-1643-5p MIMAT0007518 Gallus gallus miR-1643-5p 12 80
oan-miR-208-3p MIMAT0006921 Ornithorhynchus anatinus miR-208-3p 12 80
cre-miR1152 MIMAT0005397 Chlamydomonas reinhardtii miR1152 12 80
dme-miR-970-3p MIMAT0005486 Drosophila melanogaster miR-970-3p 12 80
hsa-miR-208b-3p MIMAT0004960 Homo sapiens miR-208b-3p 12 80
mmu-miR-208b-3p MIMAT0004939 Mus musculus miR-208b-3p 12 80
mdo-miR-208a MIMAT0004129 Monodelphis domestica miR-208a 12 80
xtr-miR-208 MIMAT0003698 Xenopus tropicalis miR-208 12 80
rno-miR-208a-3p MIMAT0000880 Rattus norvegicus miR-208a-3p 12 80
mmu-miR-208a-3p MIMAT0000520 Mus musculus miR-208a-3p 12 80
hsa-miR-208a-3p MIMAT0000241 Homo sapiens miR-208a-3p 12 80
>tae-miR1120b-3p MIMAT0035794 Triticum aestivum miR1120b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcttat 7
|||||||
Sbjct: 1 ttcttat 7
>gra-miR7484g MIMAT0034206 Gossypium raimondii miR7484g
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcttat 7
|||||||
Sbjct: 1 ttcttat 7
>ptc-miR7818 MIMAT0030378 Populus trichocarpa miR7818
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcttat 7
|||||||
Sbjct: 2 ttcttat 8
>ipu-miR-7570 MIMAT0029569 Ictalurus punctatus miR-7570
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcttat 7
|||||||
Sbjct: 1 ttcttat 7
>gma-miR171i-5p MIMAT0021056 Glycine max miR171i-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttcttat 7
|||||||
Sbjct: 7 ttcttat 1
>hvt-miR-H12-5p MIMAT0012863 Herpesvirus of miR-H12-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttcttat 7
|||||||
Sbjct: 2 ttcttat 8
>oha-miR-208-3p MIMAT0036821 Ophiophagus hannah miR-208-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>chi-miR-208b MIMAT0036053 Capra hircus miR-208b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 7 tcttat 2
>tae-miR1130b-3p MIMAT0035796 Triticum aestivum miR1130b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>tae-miR9673-5p MIMAT0035791 Triticum aestivum miR9673-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctta 6
||||||
Sbjct: 6 ttctta 1
>dvi-miR-970-3p MIMAT0035591 Drosophila virilis miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>bdi-miR5281a MIMAT0035540 Brachypodium distachyon miR5281a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>bdi-miR5281b MIMAT0035539 Brachypodium distachyon miR5281b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>gra-miR8742b MIMAT0034159 Gossypium raimondii miR8742b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 3 tcttat 8
>gra-miR8742a MIMAT0034158 Gossypium raimondii miR8742a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 3 tcttat 8
>sma-miR-8406-3p MIMAT0033517 Schistosoma mansoni miR-8406-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctta 6
||||||
Sbjct: 3 ttctta 8
>cel-miR-8189-5p MIMAT0032791 Caenorhabditis elegans miR-8189-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 3 tcttat 8
>ptc-miR6462f MIMAT0030376 Populus trichocarpa miR6462f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>ptc-miR6462e MIMAT0030375 Populus trichocarpa miR6462e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>hhi-miR-7791 MIMAT0030336 Hippoglossus hippoglossus miR-7791
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctta 6
||||||
Sbjct: 1 ttctta 6
>bdi-miR7715-3p MIMAT0030153 Brachypodium distachyon miR7715-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctta 6
||||||
Sbjct: 6 ttctta 1
>bdi-miR5181c-3p MIMAT0030108 Brachypodium distachyon
miR5181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctta 6
||||||
Sbjct: 3 ttctta 8
>mdo-miR-7328-3p MIMAT0028659 Monodelphis domestica miR-7328-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctta 6
||||||
Sbjct: 6 ttctta 1
>mdo-miR-208b-3p MIMAT0028613 Monodelphis domestica miR-208b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>ptc-miR6462d MIMAT0025224 Populus trichocarpa miR6462d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 3 tcttat 8
>ptc-miR6462c-3p MIMAT0025206 Populus trichocarpa miR6462c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 3 tcttat 8
>ptc-miR6462b MIMAT0025204 Populus trichocarpa miR6462b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 3 tcttat 8
>ptc-miR6462a MIMAT0025188 Populus trichocarpa miR6462a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 3 tcttat 8
>hme-miR-970 MIMAT0024997 Heliconius melpomene miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>mse-miR-970 MIMAT0024453 Manduca sexta miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>aca-miR-208-3p MIMAT0021860 Anolis carolinensis miR-208-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>mtr-miR5281f MIMAT0021325 Medicago truncatula miR5281f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>mtr-miR5281e MIMAT0021324 Medicago truncatula miR5281e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>mtr-miR5281d MIMAT0021323 Medicago truncatula miR5281d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>mtr-miR5281c MIMAT0021322 Medicago truncatula miR5281c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>mtr-miR5281b MIMAT0021321 Medicago truncatula miR5281b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>pma-miR-208-3p MIMAT0019521 Petromyzon marinus miR-208-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>gma-miR1520e MIMAT0018243 Glycine max miR1520e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>tca-miR-3883-5p MIMAT0018862 Tribolium castaneum miR-3883-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctta 6
||||||
Sbjct: 6 ttctta 1
>tca-miR-3811e-5p MIMAT0018664 Tribolium castaneum miR-3811e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctta 6
||||||
Sbjct: 1 ttctta 6
>hsa-miR-3658 MIMAT0018078 Homo sapiens miR-3658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctta 6
||||||
Sbjct: 8 ttctta 3
>rno-miR-208b-3p MIMAT0017845 Rattus norvegicus miR-208b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>ppy-miR-208b MIMAT0015800 Pongo pygmaeus miR-208b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>ppy-miR-208a MIMAT0015799 Pongo pygmaeus miR-208a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>cqu-miR-970 MIMAT0014378 Culex quinquefasciatus miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>aae-miR-970 MIMAT0014292 Aedes aegypti miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>ath-miR2937 MIMAT0014141 Arabidopsis thaliana miR2937
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>ssc-miR-208b MIMAT0013912 Sus scrofa miR-208b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>eca-miR-208b MIMAT0012900 Equus caballus miR-208b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>eca-miR-208a MIMAT0012899 Equus caballus miR-208a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>bmo-miR-2790-3p MIMAT0013688 Bombyx mori miR-2790-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctta 6
||||||
Sbjct: 6 ttctta 1
>dsi-miR-970-3p MIMAT0012488 Drosophila simulans miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>dps-miR-970-3p MIMAT0012222 Drosophila pseudoobscura miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>sme-miR-8b-5p MIMAT0012139 Schmidtea mediterranea miR-8b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctta 6
||||||
Sbjct: 3 ttctta 8
>hsa-miR-2116-5p MIMAT0011160 Homo sapiens miR-2116-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctta 6
||||||
Sbjct: 3 ttctta 8
>bmo-miR-970-3p MIMAT0010125 Bombyx mori miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>aga-miR-970 MIMAT0010105 Anopheles gambiae miR-970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>tca-miR-970-3p MIMAT0010092 Tribolium castaneum miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>cfa-miR-208b MIMAT0009869 Canis familiaris miR-208b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>cfa-miR-208a MIMAT0009868 Canis familiaris miR-208a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>bta-miR-208b MIMAT0009262 Bos taurus miR-208b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>bta-miR-208a MIMAT0009261 Bos taurus miR-208a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>ptr-miR-208b MIMAT0008068 Pan troglodytes miR-208b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>ptr-miR-208a MIMAT0008067 Pan troglodytes miR-208a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>mml-miR-208b-3p MIMAT0006239 Macaca mulatta miR-208b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>mml-miR-208a-3p MIMAT0006238 Macaca mulatta miR-208a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>gga-miR-1643-5p MIMAT0007518 Gallus gallus miR-1643-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcttat 7
||||||
Sbjct: 1 tcttat 6
>oan-miR-208-3p MIMAT0006921 Ornithorhynchus anatinus miR-208-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>cre-miR1152 MIMAT0005397 Chlamydomonas reinhardtii miR1152
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctta 6
||||||
Sbjct: 6 ttctta 1
>dme-miR-970-3p MIMAT0005486 Drosophila melanogaster miR-970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 8 tcttat 3
>hsa-miR-208b-3p MIMAT0004960 Homo sapiens miR-208b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>mmu-miR-208b-3p MIMAT0004939 Mus musculus miR-208b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>mdo-miR-208a MIMAT0004129 Monodelphis domestica miR-208a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>xtr-miR-208 MIMAT0003698 Xenopus tropicalis miR-208
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>rno-miR-208a-3p MIMAT0000880 Rattus norvegicus miR-208a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>mmu-miR-208a-3p MIMAT0000520 Mus musculus miR-208a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
>hsa-miR-208a-3p MIMAT0000241 Homo sapiens miR-208a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcttat 7
||||||
Sbjct: 6 tcttat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 99
Number of extensions: 93
Number of successful extensions: 77
Number of sequences better than 100.0: 77
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 77
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
