BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s33
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
stu-miR8024a-5p MIMAT0031201 Solanum tuberosum miR8024a-5p 16 6.9
ptc-miR7825 MIMAT0030384 Populus trichocarpa miR7825 16 6.9
dvi-miR-2b-5p MIMAT0032075 Drosophila virilis miR-2b-5p 16 6.9
csa-miR-1497 MIMAT0006070 Ciona savignyi miR-1497 16 6.9
cin-miR-1497-3p MIMAT0006068 Ciona intestinalis miR-1497-3p 16 6.9
odi-miR-1497h MIMAT0006057 Oikopleura dioica miR-1497h 16 6.9
odi-miR-1497g MIMAT0006056 Oikopleura dioica miR-1497g 16 6.9
odi-miR-1497f MIMAT0006055 Oikopleura dioica miR-1497f 16 6.9
odi-miR-1497e MIMAT0006054 Oikopleura dioica miR-1497e 16 6.9
odi-miR-1497d MIMAT0006053 Oikopleura dioica miR-1497d 16 6.9
odi-miR-1497c MIMAT0006052 Oikopleura dioica miR-1497c 16 6.9
odi-miR-1497b MIMAT0006051 Oikopleura dioica miR-1497b 16 6.9
odi-miR-1497a MIMAT0006050 Oikopleura dioica miR-1497a 16 6.9
dme-miR-2b-2-5p MIMAT0020783 Drosophila melanogaster miR-2b-2-5p 16 6.9
efu-miR-9218 MIMAT0034810 Eptesicus fuscus miR-9218 14 27
eca-miR-8910 MIMAT0034438 Equus caballus miR-8910 14 27
ptc-miR7815 MIMAT0030373 Populus trichocarpa miR7815 14 27
oan-miR-7404-3p MIMAT0028951 Ornithorhynchus anatinus miR-7404-3p 14 27
nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156 14 27
mml-miR-676-5p MIMAT0027113 Macaca mulatta miR-676-5p 14 27
hsa-miR-4709-3p MIMAT0019812 Homo sapiens miR-4709-3p 14 27
hsa-miR-676-5p MIMAT0018203 Homo sapiens miR-676-5p 14 27
gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526 14 27
aly-miR835-3p MIMAT0017620 Arabidopsis lyrata miR835-3p 14 27
bmo-miR-3252 MIMAT0015435 Bombyx mori miR-3252 14 27
ssc-miR-676-5p MIMAT0017382 Sus scrofa miR-676-5p 14 27
iltv-miR-I5-3p MIMAT0012729 Infectious laryngotracheitis miR-I5-3p 14 27
cfa-miR-300 MIMAT0009929 Canis familiaris miR-300 14 27
dvi-miR-13a-5p MIMAT0032046 Drosophila virilis miR-13a-5p 14 27
cfa-miR-676 MIMAT0006762 Canis familiaris miR-676 14 27
rno-miR-300-5p MIMAT0004743 Rattus norvegicus miR-300-5p 14 27
mmu-miR-300-5p MIMAT0004578 Mus musculus miR-300-5p 14 27
ath-miR163 MIMAT0000184 Arabidopsis thaliana miR163 14 27
dme-miR-2b-1-5p MIMAT0020782 Drosophila melanogaster miR-2b-1-5p 14 27
>stu-miR8024a-5p MIMAT0031201 Solanum tuberosum miR8024a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>ptc-miR7825 MIMAT0030384 Populus trichocarpa miR7825
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>dvi-miR-2b-5p MIMAT0032075 Drosophila virilis miR-2b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 8 ttgaagaa 1
>csa-miR-1497 MIMAT0006070 Ciona savignyi miR-1497
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>cin-miR-1497-3p MIMAT0006068 Ciona intestinalis miR-1497-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497h MIMAT0006057 Oikopleura dioica miR-1497h
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497g MIMAT0006056 Oikopleura dioica miR-1497g
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497f MIMAT0006055 Oikopleura dioica miR-1497f
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497e MIMAT0006054 Oikopleura dioica miR-1497e
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497d MIMAT0006053 Oikopleura dioica miR-1497d
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497c MIMAT0006052 Oikopleura dioica miR-1497c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497b MIMAT0006051 Oikopleura dioica miR-1497b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497a MIMAT0006050 Oikopleura dioica miR-1497a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 1 ttgaagaa 8
>dme-miR-2b-2-5p MIMAT0020783 Drosophila melanogaster
miR-2b-2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ttgaagaa 8
||||||||
Sbjct: 8 ttgaagaa 1
>efu-miR-9218 MIMAT0034810 Eptesicus fuscus miR-9218
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 2 ttgaaga 8
>eca-miR-8910 MIMAT0034438 Equus caballus miR-8910
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgaagaa 8
|||||||
Sbjct: 1 tgaagaa 7
>ptc-miR7815 MIMAT0030373 Populus trichocarpa miR7815
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgaaga 7
|||||||
Sbjct: 8 ttgaaga 2
>oan-miR-7404-3p MIMAT0028951 Ornithorhynchus anatinus
miR-7404-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 1 ttgaaga 7
>nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 1 ttgaaga 7
>mml-miR-676-5p MIMAT0027113 Macaca mulatta miR-676-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgaaga 7
|||||||
Sbjct: 8 ttgaaga 2
>hsa-miR-4709-3p MIMAT0019812 Homo sapiens miR-4709-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 1 ttgaaga 7
>hsa-miR-676-5p MIMAT0018203 Homo sapiens miR-676-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgaaga 7
|||||||
Sbjct: 7 ttgaaga 1
>gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 1 ttgaaga 7
>aly-miR835-3p MIMAT0017620 Arabidopsis lyrata miR835-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgaagaa 8
|||||||
Sbjct: 1 tgaagaa 7
>bmo-miR-3252 MIMAT0015435 Bombyx mori miR-3252
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgaagaa 8
|||||||
Sbjct: 1 tgaagaa 7
>ssc-miR-676-5p MIMAT0017382 Sus scrofa miR-676-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgaaga 7
|||||||
Sbjct: 8 ttgaaga 2
>iltv-miR-I5-3p MIMAT0012729 Infectious laryngotracheitis
miR-I5-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgaagaa 8
|||||||
Sbjct: 1 tgaagaa 7
>cfa-miR-300 MIMAT0009929 Canis familiaris miR-300
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 1 ttgaaga 7
>dvi-miR-13a-5p MIMAT0032046 Drosophila virilis miR-13a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgaaga 7
|||||||
Sbjct: 8 ttgaaga 2
>cfa-miR-676 MIMAT0006762 Canis familiaris miR-676
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgaaga 7
|||||||
Sbjct: 8 ttgaaga 2
>rno-miR-300-5p MIMAT0004743 Rattus norvegicus miR-300-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 1 ttgaaga 7
>mmu-miR-300-5p MIMAT0004578 Mus musculus miR-300-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 1 ttgaaga 7
>ath-miR163 MIMAT0000184 Arabidopsis thaliana miR163
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgaaga 7
|||||||
Sbjct: 1 ttgaaga 7
>dme-miR-2b-1-5p MIMAT0020782 Drosophila melanogaster
miR-2b-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgaaga 7
|||||||
Sbjct: 8 ttgaaga 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 211
Number of extensions: 163
Number of successful extensions: 145
Number of sequences better than 100.0: 34
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 34
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)