BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s33
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

stu-miR8024a-5p MIMAT0031201 Solanum tuberosum miR8024a-5p             16   6.9  
ptc-miR7825 MIMAT0030384 Populus trichocarpa miR7825                   16   6.9  
dvi-miR-2b-5p MIMAT0032075 Drosophila virilis miR-2b-5p                16   6.9  
csa-miR-1497 MIMAT0006070 Ciona savignyi miR-1497                      16   6.9  
cin-miR-1497-3p MIMAT0006068 Ciona intestinalis miR-1497-3p            16   6.9  
odi-miR-1497h MIMAT0006057 Oikopleura dioica miR-1497h                 16   6.9  
odi-miR-1497g MIMAT0006056 Oikopleura dioica miR-1497g                 16   6.9  
odi-miR-1497f MIMAT0006055 Oikopleura dioica miR-1497f                 16   6.9  
odi-miR-1497e MIMAT0006054 Oikopleura dioica miR-1497e                 16   6.9  
odi-miR-1497d MIMAT0006053 Oikopleura dioica miR-1497d                 16   6.9  
odi-miR-1497c MIMAT0006052 Oikopleura dioica miR-1497c                 16   6.9  
odi-miR-1497b MIMAT0006051 Oikopleura dioica miR-1497b                 16   6.9  
odi-miR-1497a MIMAT0006050 Oikopleura dioica miR-1497a                 16   6.9  
dme-miR-2b-2-5p MIMAT0020783 Drosophila melanogaster miR-2b-2-5p       16   6.9  
efu-miR-9218 MIMAT0034810 Eptesicus fuscus miR-9218                    14      27
eca-miR-8910 MIMAT0034438 Equus caballus miR-8910                      14      27
ptc-miR7815 MIMAT0030373 Populus trichocarpa miR7815                   14      27
oan-miR-7404-3p MIMAT0028951 Ornithorhynchus anatinus miR-7404-3p      14      27
nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156                     14      27
mml-miR-676-5p MIMAT0027113 Macaca mulatta miR-676-5p                  14      27
hsa-miR-4709-3p MIMAT0019812 Homo sapiens miR-4709-3p                  14      27
hsa-miR-676-5p MIMAT0018203 Homo sapiens miR-676-5p                    14      27
gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526                       14      27
aly-miR835-3p MIMAT0017620 Arabidopsis lyrata miR835-3p                14      27
bmo-miR-3252 MIMAT0015435 Bombyx mori miR-3252                         14      27
ssc-miR-676-5p MIMAT0017382 Sus scrofa miR-676-5p                      14      27
iltv-miR-I5-3p MIMAT0012729 Infectious laryngotracheitis miR-I5-3p     14      27
cfa-miR-300 MIMAT0009929 Canis familiaris miR-300                      14      27
dvi-miR-13a-5p MIMAT0032046 Drosophila virilis miR-13a-5p              14      27
cfa-miR-676 MIMAT0006762 Canis familiaris miR-676                      14      27
rno-miR-300-5p MIMAT0004743 Rattus norvegicus miR-300-5p               14      27
mmu-miR-300-5p MIMAT0004578 Mus musculus miR-300-5p                    14      27
ath-miR163 MIMAT0000184 Arabidopsis thaliana miR163                    14      27
dme-miR-2b-1-5p MIMAT0020782 Drosophila melanogaster miR-2b-1-5p       14      27
>stu-miR8024a-5p MIMAT0031201 Solanum tuberosum miR8024a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>ptc-miR7825 MIMAT0030384 Populus trichocarpa miR7825
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>dvi-miR-2b-5p MIMAT0032075 Drosophila virilis miR-2b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 8 ttgaagaa 1
>csa-miR-1497 MIMAT0006070 Ciona savignyi miR-1497
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>cin-miR-1497-3p MIMAT0006068 Ciona intestinalis miR-1497-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497h MIMAT0006057 Oikopleura dioica miR-1497h
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497g MIMAT0006056 Oikopleura dioica miR-1497g
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497f MIMAT0006055 Oikopleura dioica miR-1497f
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497e MIMAT0006054 Oikopleura dioica miR-1497e
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497d MIMAT0006053 Oikopleura dioica miR-1497d
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497c MIMAT0006052 Oikopleura dioica miR-1497c
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497b MIMAT0006051 Oikopleura dioica miR-1497b
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>odi-miR-1497a MIMAT0006050 Oikopleura dioica miR-1497a
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 1 ttgaagaa 8
>dme-miR-2b-2-5p MIMAT0020783 Drosophila melanogaster
         miR-2b-2-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 ttgaagaa 8
         ||||||||
Sbjct: 8 ttgaagaa 1
>efu-miR-9218 MIMAT0034810 Eptesicus fuscus miR-9218
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 2 ttgaaga 8
>eca-miR-8910 MIMAT0034438 Equus caballus miR-8910
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgaagaa 8
         |||||||
Sbjct: 1 tgaagaa 7
>ptc-miR7815 MIMAT0030373 Populus trichocarpa miR7815
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 8 ttgaaga 2
>oan-miR-7404-3p MIMAT0028951 Ornithorhynchus anatinus
         miR-7404-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 1 ttgaaga 7
>nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 1 ttgaaga 7
>mml-miR-676-5p MIMAT0027113 Macaca mulatta miR-676-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 8 ttgaaga 2
>hsa-miR-4709-3p MIMAT0019812 Homo sapiens miR-4709-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 1 ttgaaga 7
>hsa-miR-676-5p MIMAT0018203 Homo sapiens miR-676-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 7 ttgaaga 1
>gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 1 ttgaaga 7
>aly-miR835-3p MIMAT0017620 Arabidopsis lyrata miR835-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgaagaa 8
         |||||||
Sbjct: 1 tgaagaa 7
>bmo-miR-3252 MIMAT0015435 Bombyx mori miR-3252
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgaagaa 8
         |||||||
Sbjct: 1 tgaagaa 7
>ssc-miR-676-5p MIMAT0017382 Sus scrofa miR-676-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 8 ttgaaga 2
>iltv-miR-I5-3p MIMAT0012729 Infectious laryngotracheitis
         miR-I5-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgaagaa 8
         |||||||
Sbjct: 1 tgaagaa 7
>cfa-miR-300 MIMAT0009929 Canis familiaris miR-300
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 1 ttgaaga 7
>dvi-miR-13a-5p MIMAT0032046 Drosophila virilis miR-13a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 8 ttgaaga 2
>cfa-miR-676 MIMAT0006762 Canis familiaris miR-676
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 8 ttgaaga 2
>rno-miR-300-5p MIMAT0004743 Rattus norvegicus miR-300-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 1 ttgaaga 7
>mmu-miR-300-5p MIMAT0004578 Mus musculus miR-300-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 1 ttgaaga 7
>ath-miR163 MIMAT0000184 Arabidopsis thaliana miR163
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 1 ttgaaga 7
>dme-miR-2b-1-5p MIMAT0020782 Drosophila melanogaster
         miR-2b-1-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttgaaga 7
         |||||||
Sbjct: 8 ttgaaga 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 211
Number of extensions: 163
Number of successful extensions: 145
Number of sequences better than 100.0: 34
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 34
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)